Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   RKV27_RS06265 Genome accession   NZ_CP134533
Coordinates   1202136..1203206 (+) Length   356 a.a.
NCBI ID   WP_000776401.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_5844     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197136..1208206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS06235 - 1197559..1199022 (+) 1464 WP_001017871.1 rhomboid family intramembrane serine protease -
  RKV27_RS06240 - 1199003..1199206 (+) 204 WP_000087561.1 YqgQ family protein -
  RKV27_RS06245 - 1199203..1200189 (+) 987 WP_000161314.1 ROK family glucokinase -
  RKV27_RS06250 - 1200189..1200518 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RKV27_RS06255 - 1200515..1201138 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RKV27_RS06260 comGA 1201190..1202164 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RKV27_RS06265 comGB 1202136..1203206 (+) 1071 WP_000776401.1 competence type IV pilus assembly protein ComGB Machinery gene
  RKV27_RS06270 comGC 1203220..1203531 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RKV27_RS06275 comGD 1203509..1203955 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  RKV27_RS06280 comGE 1203942..1204241 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  RKV27_RS06285 comGF 1204159..1204656 (+) 498 WP_020978197.1 competence type IV pilus minor pilin ComGF Machinery gene
  RKV27_RS06290 - 1204753..1204899 (+) 147 WP_001789879.1 hypothetical protein -
  RKV27_RS06295 - 1204889..1205413 (+) 525 WP_001015121.1 shikimate kinase -
  RKV27_RS06300 gcvT 1205572..1206663 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RKV27_RS06305 gcvPA 1206683..1208029 (+) 1347 WP_000019681.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41508.88 Da        Isoelectric Point: 9.9593

>NTDB_id=880742 RKV27_RS06265 WP_000776401.1 1202136..1203206(+) (comGB) [Staphylococcus aureus strain KNIH_5844]
MKLQWINTFKLHFEKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=880742 RKV27_RS06265 WP_000776401.1 1202136..1203206(+) (comGB) [Staphylococcus aureus strain KNIH_5844]
GTGAAACTACAATGGATAAATACATTTAAACTACATTTTGAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACTGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994