Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RKS58_RS21690 Genome accession   NZ_CP134502
Coordinates   4267248..4268198 (-) Length   316 a.a.
NCBI ID   WP_004231947.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain Lys24     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4262248..4273198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKS58_RS21665 (RKS58_21665) - 4262942..4263487 (+) 546 WP_048394207.1 hypothetical protein -
  RKS58_RS21670 (RKS58_21670) - 4264140..4264454 (-) 315 WP_054549614.1 antibiotic biosynthesis monooxygenase -
  RKS58_RS21675 (RKS58_21675) - 4264456..4265481 (-) 1026 WP_054549615.1 siderophore ABC transporter substrate-binding protein -
  RKS58_RS21680 (RKS58_21680) - 4265544..4266305 (-) 762 WP_048394201.1 ABC transporter ATP-binding protein -
  RKS58_RS21685 (RKS58_21685) - 4266302..4267255 (-) 954 WP_004231949.1 iron chelate uptake ABC transporter family permease subunit -
  RKS58_RS21690 (RKS58_21690) ceuB 4267248..4268198 (-) 951 WP_004231947.1 ABC transporter permease Machinery gene
  RKS58_RS21695 (RKS58_21695) - 4268483..4269535 (-) 1053 WP_054549616.1 hypothetical protein -
  RKS58_RS21700 (RKS58_21700) menC 4269586..4270692 (-) 1107 WP_313870636.1 o-succinylbenzoate synthase -
  RKS58_RS21705 (RKS58_21705) - 4270714..4271538 (-) 825 WP_313870637.1 GNAT family N-acetyltransferase -
  RKS58_RS21710 (RKS58_21710) - 4271538..4272683 (-) 1146 WP_313870638.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34796.00 Da        Isoelectric Point: 10.1980

>NTDB_id=880674 RKS58_RS21690 WP_004231947.1 4267248..4268198(-) (ceuB) [Lysinibacillus capsici strain Lys24]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=880674 RKS58_RS21690 WP_004231947.1 4267248..4268198(-) (ceuB) [Lysinibacillus capsici strain Lys24]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGCTGTCTATTGTGTCGCTCTTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGTGTATTGATTTCCATGATGTTCTTTACGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTCTTTGCATATAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTAAGTGTACC
AATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACAACAGTGGTGTTAACAGTCGGTATC
ATTCCATTTCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTGTTATTCTGTGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528