Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RI196_RS16135 Genome accession   NZ_CP134501
Coordinates   3304173..3305126 (-) Length   317 a.a.
NCBI ID   WP_063386800.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3299173..3310126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS16115 (RI196_16115) - 3299798..3300868 (+) 1071 WP_311066525.1 hypothetical protein -
  RI196_RS16120 (RI196_16120) - 3301361..3302317 (-) 957 WP_311066526.1 siderophore ABC transporter substrate-binding protein -
  RI196_RS16125 (RI196_16125) - 3302481..3303239 (-) 759 WP_063386798.1 ABC transporter ATP-binding protein -
  RI196_RS16130 (RI196_16130) - 3303233..3304183 (-) 951 WP_066249998.1 iron chelate uptake ABC transporter family permease subunit -
  RI196_RS16135 (RI196_16135) ceuB 3304173..3305126 (-) 954 WP_063386800.1 ABC transporter permease Machinery gene
  RI196_RS16140 (RI196_16140) - 3305510..3305986 (+) 477 WP_063386801.1 N-acetyltransferase -
  RI196_RS16145 (RI196_16145) ltrA 3306173..3307432 (-) 1260 WP_311067329.1 group II intron reverse transcriptase/maturase -
  RI196_RS16150 (RI196_16150) - 3308092..3308946 (-) 855 WP_311066527.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34892.98 Da        Isoelectric Point: 9.8243

>NTDB_id=880637 RI196_RS16135 WP_063386800.1 3304173..3305126(-) (ceuB) [Aeribacillus composti strain HB-1]
MKKRYLIIALIILSIASIFIGVNDIKPTDIFNLTDEQIQILIISRIPRVISIIIAGTSISIAGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAIMVFADASPIQKMIVAFAFALLGTFIFMKILEKIKYKDTIFVPLVGLMFGNIIGSITTFFAYKNNLI
QNVSSWLEGDFSLILKGQYELLYVSIPFVLIAYLYANQFTVAGMGEEFSKNLGLNYKQVVNIGLVIVALITSSVVLTVGT
IPFLGLVVPNIVAIYNGDHLKKNLIHTALLGAVFVMFCDILGRIIIYPYEISISLTVGVIGSAIFVYLLMRRKAYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=880637 RI196_RS16135 WP_063386800.1 3304173..3305126(-) (ceuB) [Aeribacillus composti strain HB-1]
ATGAAAAAACGATATTTGATCATTGCTCTCATTATTCTTTCAATTGCATCGATTTTTATCGGAGTAAACGATATTAAACC
AACTGATATATTCAATTTGACAGATGAACAAATACAAATTTTGATCATCAGCAGAATTCCGCGCGTTATTAGCATTATTA
TTGCAGGAACGAGTATAAGCATTGCCGGTCTTATTATGCAGCAGCTGAGCAGAAACAAGTTCGTTTCCCCAACTACGGCA
GGAACAATGGATTCCGCCAGATTGGGGATTTTAGTTGCGATCATGGTTTTTGCAGACGCCAGTCCGATTCAAAAAATGAT
TGTCGCTTTTGCTTTTGCACTTTTAGGAACATTTATCTTTATGAAAATATTAGAAAAAATTAAATATAAAGATACTATTT
TTGTTCCTCTAGTCGGGCTGATGTTCGGCAACATCATTGGATCTATCACTACTTTTTTTGCATACAAAAATAATTTGATT
CAAAATGTTTCCTCATGGCTGGAAGGAGATTTTTCGTTAATTTTAAAAGGTCAATATGAATTATTGTATGTCAGCATTCC
TTTTGTATTAATTGCATACTTGTATGCGAATCAATTCACTGTCGCTGGAATGGGAGAGGAATTTTCGAAAAATTTAGGCT
TGAATTATAAACAAGTTGTCAATATCGGACTTGTTATCGTAGCTTTGATCACTTCATCTGTTGTATTGACGGTTGGAACC
ATTCCGTTTCTAGGTCTTGTCGTTCCGAATATTGTCGCCATATACAATGGAGACCATTTGAAAAAGAATTTGATTCATAC
CGCTTTGCTCGGTGCTGTTTTCGTTATGTTTTGCGATATTTTAGGGCGAATCATTATATATCCGTACGAAATCTCGATCA
GCTTAACCGTCGGTGTCATCGGCAGTGCCATTTTTGTTTACTTACTTATGAGGAGAAAAGCATATGGGTTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536