Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RI196_RS12375 Genome accession   NZ_CP134501
Coordinates   2548431..2550155 (-) Length   574 a.a.
NCBI ID   WP_311066313.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2543431..2555155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS12360 (RI196_12360) - 2544924..2545172 (+) 249 WP_063388136.1 DUF2627 domain-containing protein -
  RI196_RS12365 (RI196_12365) spo0A 2545193..2545987 (-) 795 WP_063388135.1 sporulation transcription factor Spo0A -
  RI196_RS12370 (RI196_12370) spoIVB 2547026..2548315 (-) 1290 WP_311066312.1 SpoIVB peptidase -
  RI196_RS12375 (RI196_12375) recN 2548431..2550155 (-) 1725 WP_311066313.1 DNA repair protein RecN Machinery gene
  RI196_RS12380 (RI196_12380) ahrC 2550177..2550626 (-) 450 WP_063388132.1 transcriptional regulator AhrC/ArgR -
  RI196_RS12385 (RI196_12385) - 2550694..2551527 (-) 834 WP_063388131.1 TlyA family RNA methyltransferase -
  RI196_RS12390 (RI196_12390) dxs 2551520..2553421 (-) 1902 WP_311066314.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RI196_RS12395 (RI196_12395) - 2553432..2554052 (-) 621 WP_094246530.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64899.47 Da        Isoelectric Point: 5.7729

>NTDB_id=880624 RI196_RS12375 WP_311066313.1 2548431..2550155(-) (recN) [Aeribacillus composti strain HB-1]
MLAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRAGEKRAELEGLFILEEEDHPCLKK
CHELGIDASEGMIVLNRNISANGKSICRINGKLVTIGILRDIGSTLVDIHGQHDHQELMDEQKHLHLLDEYGGEEVKKAK
DAYVKLYKKYADLTKRLKALSENEQQMAHRLDLLKFQLKEIDDADLKMDEDIKLQEERQEMLNFEKIYEALKNSYESLQG
EQRGLDFLRLAMNHLEEAAEFNKQLKEMSETLSNSFYVVEDLTFQLRNELERMEFNPDRLNMIEDRLHVIHRLKRKYGQT
IKDILQYRDEIEKEIDTIENRDSHIQTLRNELKSVVEELLTKSQHLTAIRKKYANKLTAQITSELKQLYMDKTTFKVQFS
QKEAQDSALIDGIPAKFGSDGMDFVEFYISTNPGEPLKPLAKIASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSG
RVAQAIGEKIYQVSINSQVLCITHLPQVAAMADNHLLIAKEVSKEGRTKTKVLPLSEKEKIAEIGRMIAGAEVTELSKQH
AKELLDLAISVKSS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=880624 RI196_RS12375 WP_311066313.1 2548431..2550155(-) (recN) [Aeribacillus composti strain HB-1]
ATGTTAGCGGAATTGTCGATTAAAAATTTTGCCATTATTGAATCCCTATCTCTTTCTTTTGAAAAAGGGCTGACAGTGCT
GACGGGAGAAACGGGTGCTGGGAAATCGATCATTATTGATGCTATATCTCTTCTTGTAGGAGGACGCGGTTCTTCTGAAT
TTGTCCGAGCCGGTGAAAAGCGCGCTGAATTGGAAGGGTTGTTTATATTGGAAGAAGAGGACCATCCGTGCTTGAAAAAG
TGCCATGAATTAGGAATAGATGCTAGTGAAGGCATGATTGTTTTAAACCGGAATATCTCCGCTAACGGAAAAAGCATTTG
CAGAATTAATGGAAAGCTTGTCACAATCGGAATTCTCCGGGATATTGGGAGCACATTAGTCGATATACACGGACAGCACG
ATCATCAAGAGCTGATGGACGAGCAAAAGCATCTTCATCTTCTCGACGAATATGGCGGCGAAGAAGTGAAAAAAGCAAAG
GATGCATACGTAAAGCTTTATAAAAAATACGCGGACTTAACAAAGCGGTTAAAAGCCCTTTCAGAAAATGAGCAGCAGAT
GGCGCATCGATTGGATTTATTGAAGTTTCAATTAAAGGAAATTGACGATGCCGATTTAAAAATGGATGAAGATATAAAGC
TTCAGGAAGAACGGCAGGAAATGTTAAATTTTGAAAAAATTTATGAAGCCTTGAAAAATAGCTATGAATCGCTGCAGGGA
GAGCAGCGCGGGCTTGATTTTTTACGACTTGCCATGAATCATTTAGAAGAAGCAGCAGAATTTAATAAACAGTTAAAAGA
AATGTCCGAAACGCTGTCGAACAGTTTTTACGTTGTAGAGGATTTAACGTTTCAGCTTAGAAATGAATTAGAACGCATGG
AATTTAATCCTGATCGGTTAAATATGATAGAGGATCGTCTCCATGTCATTCATCGGTTAAAACGAAAGTACGGGCAAACA
ATCAAAGACATTTTGCAATATAGAGATGAAATTGAAAAAGAGATCGATACGATTGAAAACCGTGATAGCCATATTCAAAC
GCTTAGAAATGAGCTTAAATCTGTCGTCGAAGAACTGCTGACAAAATCCCAACATTTAACAGCAATAAGAAAAAAATACG
CAAACAAGCTAACCGCTCAAATCACATCTGAATTAAAACAGCTGTACATGGATAAAACTACATTTAAGGTTCAATTTTCG
CAGAAAGAGGCCCAAGATTCCGCTTTGATCGATGGAATTCCAGCGAAATTTGGAAGTGACGGCATGGATTTTGTGGAATT
TTACATTTCCACCAATCCAGGCGAACCTCTTAAGCCTCTTGCGAAAATTGCTTCCGGCGGGGAATTATCAAGAATCATGC
TTGCCTTAAAAACGATTTTTTCCAAGCATCAAGGAATTACTTCCATCATATTTGACGAGGTGGATACTGGTGTAAGCGGC
CGTGTCGCCCAAGCGATCGGAGAAAAAATTTATCAGGTGTCGATTAACTCTCAAGTGCTATGCATCACGCATCTTCCTCA
AGTTGCAGCGATGGCTGACAACCATCTATTAATTGCTAAGGAAGTAAGCAAAGAGGGAAGAACGAAAACAAAGGTTCTTC
CGCTTTCTGAAAAAGAAAAAATTGCAGAAATCGGCCGGATGATTGCTGGAGCGGAAGTGACGGAATTGTCGAAGCAGCAT
GCAAAAGAGCTGTTGGATCTGGCTATATCGGTGAAATCCTCCTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.392

100

0.627