Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RI196_RS05415 Genome accession   NZ_CP134501
Coordinates   1075539..1076489 (+) Length   316 a.a.
NCBI ID   WP_066248363.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070539..1081489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS05400 (RI196_05400) - 1073210..1073392 (-) 183 WP_311067036.1 YjzD family protein -
  RI196_RS05405 (RI196_05405) - 1073539..1074276 (+) 738 WP_311067038.1 hypothetical protein -
  RI196_RS05410 (RI196_05410) - 1074416..1075264 (+) 849 WP_063387011.1 NAD(P)-dependent oxidoreductase -
  RI196_RS05415 (RI196_05415) med 1075539..1076489 (+) 951 WP_066248363.1 BMP family ABC transporter substrate-binding protein Regulator
  RI196_RS05420 (RI196_05420) - 1076545..1076817 (-) 273 WP_063387009.1 hypothetical protein -
  RI196_RS05425 (RI196_05425) - 1077031..1077963 (+) 933 WP_063387008.1 beta-ketoacyl-ACP synthase III -
  RI196_RS05430 (RI196_05430) fabF 1078033..1079277 (+) 1245 WP_063387007.1 beta-ketoacyl-ACP synthase II -
  RI196_RS05435 (RI196_05435) - 1079411..1080190 (+) 780 WP_063387006.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35589.73 Da        Isoelectric Point: 4.8537

>NTDB_id=880612 RI196_RS05415 WP_066248363.1 1075539..1076489(+) (med) [Aeribacillus composti strain HB-1]
MYKKMFVIIFILLFLVGCGQASEKGKLKKVGLLVPETINDQVWGTKGYKGLLKIQSELNVDVFYKEGMNSEAAVREAVEE
FHGKGVNLIIGHGHEYEGFFRDLLDQYPDIHFVFFNGDAKGPNATSLNFEAHAMGFFAGMVAAHMTKTNEIGIIAAFEWQ
PEVEGFYQGAQFENPNVTIHIEYVQGFDHVDLALEKLDKLVAENVDVVYPAGDRYNVPVIEKVKEKGIYSIGFVSDQSDL
GEQMVLTSTVQHVDELYLLVAKKFIKGELESGNLYFDFQDGVIDLGKFSPLVDKEFKNKVLKYVEEYKKTGKLPNE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=880612 RI196_RS05415 WP_066248363.1 1075539..1076489(+) (med) [Aeribacillus composti strain HB-1]
ATGTATAAAAAAATGTTTGTGATCATTTTTATTTTATTATTTCTCGTTGGCTGCGGACAAGCATCAGAAAAAGGAAAACT
GAAAAAGGTGGGTTTGCTCGTTCCTGAAACGATTAATGATCAAGTTTGGGGGACAAAAGGGTATAAAGGGCTGTTAAAAA
TTCAGTCTGAGCTGAATGTAGATGTTTTTTATAAAGAAGGAATGAATTCCGAAGCGGCGGTGAGGGAGGCGGTCGAAGAA
TTTCACGGAAAGGGAGTTAATTTAATTATCGGGCACGGTCACGAATATGAGGGTTTTTTTAGAGATTTGCTGGATCAATA
TCCAGATATTCATTTCGTTTTTTTTAATGGTGATGCAAAAGGCCCGAATGCCACAAGTTTAAATTTTGAGGCGCATGCCA
TGGGCTTTTTCGCAGGAATGGTGGCAGCACATATGACAAAAACAAACGAAATCGGAATTATTGCCGCTTTTGAGTGGCAG
CCTGAAGTGGAGGGGTTTTATCAAGGGGCGCAATTTGAAAATCCAAACGTAACCATTCACATTGAATATGTCCAAGGGTT
TGATCATGTTGACTTGGCGCTTGAGAAGCTCGATAAGCTTGTCGCAGAAAATGTAGATGTTGTTTATCCGGCAGGCGACA
GATACAACGTGCCAGTGATCGAAAAAGTGAAGGAAAAAGGAATATATTCAATTGGCTTTGTTTCAGATCAAAGTGATTTG
GGCGAACAAATGGTTTTAACAAGCACAGTACAGCATGTGGATGAGTTGTATTTATTAGTCGCAAAAAAATTTATAAAAGG
CGAACTGGAAAGCGGGAATTTATATTTTGATTTTCAAGATGGTGTGATTGATTTAGGGAAGTTCAGCCCTCTAGTAGATA
AAGAATTTAAAAATAAAGTTTTAAAATATGTGGAAGAATATAAGAAAACAGGGAAATTGCCTAACGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.503

99.367

0.532