Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RI196_RS04500 Genome accession   NZ_CP134501
Coordinates   905386..906024 (+) Length   212 a.a.
NCBI ID   WP_066249242.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 900386..911024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS04465 (RI196_04465) - 900424..900642 (+) 219 WP_063387068.1 spore germination protein -
  RI196_RS04470 (RI196_04470) - 900722..900970 (+) 249 WP_066249236.1 YueH family protein -
  RI196_RS04475 (RI196_04475) - 901020..901259 (-) 240 WP_232515690.1 helix-turn-helix transcriptional regulator -
  RI196_RS04480 (RI196_04480) - 901599..901739 (+) 141 WP_063387066.1 DegQ family regulator -
  RI196_RS04485 (RI196_04485) - 901857..902789 (+) 933 WP_082830254.1 polyprenyl synthetase family protein -
  RI196_RS04490 (RI196_04490) comX 902806..902973 (+) 168 WP_082829505.1 competence pheromone ComX -
  RI196_RS04495 (RI196_04495) - 902992..905319 (+) 2328 WP_311066994.1 ATP-binding protein -
  RI196_RS04500 (RI196_04500) comA 905386..906024 (+) 639 WP_066249242.1 response regulator transcription factor Regulator
  RI196_RS04505 (RI196_04505) mnhG 906068..906433 (-) 366 WP_311066995.1 monovalent cation/H(+) antiporter subunit G -
  RI196_RS04510 (RI196_04510) - 906414..906701 (-) 288 WP_311066996.1 Na(+)/H(+) antiporter subunit F1 -
  RI196_RS04515 (RI196_04515) - 906701..907177 (-) 477 WP_130157059.1 Na+/H+ antiporter subunit E -
  RI196_RS04520 (RI196_04520) - 907183..908667 (-) 1485 WP_066249250.1 Na+/H+ antiporter subunit D -
  RI196_RS04525 (RI196_04525) - 908664..909002 (-) 339 WP_144597768.1 Na(+)/H(+) antiporter subunit C -
  RI196_RS04530 (RI196_04530) - 909002..909439 (-) 438 WP_130157063.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24058.80 Da        Isoelectric Point: 4.9222

>NTDB_id=880608 RI196_RS04500 WP_066249242.1 905386..906024(+) (comA) [Aeribacillus composti strain HB-1]
MIRILVIDDHPAVREGTKAILETDSEVEVDCLEPPYTAELMKKIDFLQYDAVLMDMNLGDVNGIELAKQITSQEHQCKVL
LYTGYDVNDYMEEAISLGIHGVISKTESKEKILSHIRHALLGEIILSFDYVKKLIERQTLKSPSMKEANEPLTDREKMIL
MEVERGLTNQEIADKLHLSKRSIEYSLTSIFNKLHVSSRTEAVLIAKSEGIL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=880608 RI196_RS04500 WP_066249242.1 905386..906024(+) (comA) [Aeribacillus composti strain HB-1]
ATGATTCGTATTTTAGTGATTGACGATCATCCTGCTGTGAGAGAAGGGACAAAAGCGATATTGGAGACGGATTCTGAAGT
TGAAGTGGATTGTCTGGAGCCTCCTTATACGGCTGAACTTATGAAGAAAATCGATTTTTTGCAATATGATGCAGTTCTTA
TGGATATGAATTTAGGTGACGTCAACGGGATTGAACTGGCAAAGCAAATAACATCTCAAGAACACCAATGCAAAGTCCTT
CTTTATACTGGATATGATGTCAATGATTATATGGAAGAAGCGATTTCCTTAGGCATTCATGGAGTAATCAGCAAGACGGA
GTCAAAAGAGAAAATATTATCTCACATTCGCCATGCGTTGCTTGGTGAGATTATTCTATCATTTGATTACGTAAAAAAAT
TGATTGAACGACAGACATTAAAGTCGCCATCTATGAAAGAAGCAAATGAGCCTTTAACAGATAGGGAAAAAATGATTTTA
ATGGAAGTCGAAAGAGGGCTAACAAATCAGGAAATAGCAGATAAGCTGCATTTAAGCAAAAGATCGATTGAATATAGTCT
CACTTCCATTTTTAATAAGCTGCACGTCAGCTCTCGGACAGAAGCCGTATTAATTGCGAAGTCAGAAGGCATTCTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

63.084

100

0.637