Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RI196_RS02755 Genome accession   NZ_CP134501
Coordinates   549534..550916 (+) Length   460 a.a.
NCBI ID   WP_311066845.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544534..555916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS02735 (RI196_02735) - 544987..545625 (-) 639 WP_242009286.1 YigZ family protein -
  RI196_RS02740 (RI196_02740) - 545797..546954 (+) 1158 WP_130158076.1 ATP-binding protein -
  RI196_RS02745 (RI196_02745) - 547023..547700 (+) 678 WP_063386301.1 response regulator transcription factor -
  RI196_RS02750 (RI196_02750) - 548394..549233 (+) 840 WP_311067319.1 DegV family protein -
  RI196_RS02755 (RI196_02755) comFA 549534..550916 (+) 1383 WP_311066845.1 DEAD/DEAH box helicase Machinery gene
  RI196_RS02760 (RI196_02760) - 551055..551330 (+) 276 WP_063386299.1 late competence development ComFB family protein -
  RI196_RS02765 (RI196_02765) - 551339..552028 (+) 690 WP_066247014.1 ComF family protein -
  RI196_RS02770 (RI196_02770) - 552094..552516 (+) 423 WP_063386298.1 TIGR03826 family flagellar region protein -
  RI196_RS02775 (RI196_02775) flgM 552607..552876 (+) 270 WP_063386297.1 flagellar biosynthesis anti-sigma factor FlgM -
  RI196_RS02780 (RI196_02780) - 553117..553596 (+) 480 WP_066246862.1 flagellar protein FlgN -
  RI196_RS02785 (RI196_02785) flgK 553611..555116 (+) 1506 WP_311066846.1 flagellar hook-associated protein FlgK -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51747.82 Da        Isoelectric Point: 8.9676

>NTDB_id=880606 RI196_RS02755 WP_311066845.1 549534..550916(+) (comFA) [Aeribacillus composti strain HB-1]
MHDHDHDLQKHLLGRHLLSNELPFSMDAVQNAPFVEIEQGVVKKSGFFYCNRCGNDQPFLFAGFDCAKCGKFCHYCRNCI
MMGRVSECSKLVSFPRREKEEKHSIQSDQTNFLQWDGELSPAQKRASDRIAESVLQRTDCLIWAVCGAGKTEVLFAGINT
ALQKGLFVCIAAPRTDVVLELGPRLKNVFPSIDVAVLYGGSEDRLKLSPITISTTHQLLRYKEAFDVVILDEVDAFPYSV
DSALQFAVEKARKRNSSLIYLTATPSSSIKRHFKPSEIVKIPARYHGYPLPVPEFKWCGNWKKRLEKGKLPKNIITWAAE
QMQKERQAFLFVPEIKVLHDVVPLLKKLNSAVEGVHAEDPQRKEKVRAFRNGRIPIIVTTTILERGVTVPGTDAAVLGAE
ETIFTESALVQISGRVGRSMNNPTGSVIFFHYGKTNEMIAAKHHILAMNREAAKEDLLKR

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=880606 RI196_RS02755 WP_311066845.1 549534..550916(+) (comFA) [Aeribacillus composti strain HB-1]
ATGCATGATCATGATCATGATCTCCAAAAACATCTTCTCGGAAGACATCTCCTTTCAAATGAGCTCCCGTTTTCAATGGA
TGCCGTTCAAAATGCCCCCTTCGTTGAAATAGAACAAGGTGTTGTGAAAAAATCCGGTTTTTTTTATTGCAATCGATGTG
GAAATGATCAGCCCTTTTTATTTGCAGGCTTTGACTGTGCAAAGTGCGGAAAGTTTTGTCATTATTGCCGGAACTGCATC
ATGATGGGGCGAGTAAGTGAATGCTCAAAGCTTGTTAGTTTTCCAAGACGAGAGAAGGAGGAAAAACATTCGATCCAATC
GGATCAAACAAACTTTTTGCAATGGGATGGTGAACTGTCTCCGGCGCAAAAAAGAGCATCTGACCGGATTGCGGAGTCCG
TTTTGCAGCGTACAGACTGTCTCATTTGGGCAGTTTGCGGAGCAGGAAAAACAGAGGTGCTGTTTGCCGGCATAAACACA
GCTTTGCAGAAAGGGCTATTTGTTTGCATTGCTGCACCGCGTACGGATGTTGTTTTGGAGCTTGGACCGCGTTTGAAAAA
CGTTTTTCCGAGCATCGATGTGGCAGTGCTTTACGGAGGAAGCGAAGATCGTTTGAAGCTGAGCCCAATTACCATTTCAA
CGACTCATCAGCTTCTTCGGTATAAAGAAGCCTTTGACGTGGTGATTCTTGACGAAGTGGATGCTTTTCCATATTCTGTA
GATTCTGCTTTGCAATTTGCGGTTGAAAAAGCACGCAAACGAAACAGCTCCCTTATTTATTTAACTGCGACTCCCTCCTC
ATCAATTAAGCGGCATTTTAAGCCTTCCGAAATTGTGAAAATCCCTGCTCGATACCATGGTTATCCCCTACCTGTTCCTG
AATTCAAATGGTGCGGCAATTGGAAAAAAAGATTGGAGAAAGGAAAGCTGCCGAAAAATATCATCACATGGGCAGCCGAA
CAAATGCAAAAGGAAAGACAAGCTTTTCTATTTGTACCGGAAATCAAAGTGCTTCATGATGTCGTTCCGTTACTAAAAAA
ATTGAATTCAGCGGTTGAAGGAGTACATGCCGAAGATCCCCAAAGGAAAGAAAAGGTTCGGGCATTTCGAAATGGCCGGA
TTCCGATCATTGTCACAACTACCATTTTGGAAAGGGGTGTAACAGTTCCTGGAACTGATGCAGCTGTTTTAGGAGCAGAA
GAAACCATTTTTACAGAAAGTGCCCTTGTTCAAATATCCGGCCGTGTTGGGCGGAGCATGAACAATCCAACAGGCTCCGT
TATCTTTTTCCATTATGGCAAAACAAATGAAATGATTGCAGCGAAACACCATATTCTTGCTATGAATCGGGAAGCGGCAA
AGGAAGATTTGTTAAAGCGTTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(320-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.11

98.478

0.493
  comFA Latilactobacillus sakei subsp. sakei 23K

37.528

96.739

0.363