Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHP75_RS17785 Genome accession   NZ_CP134499
Coordinates   3737775..3739139 (-) Length   454 a.a.
NCBI ID   WP_311089351.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3732775..3744139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP75_RS17775 (RHP75_17775) glyA 3735970..3737223 (+) 1254 WP_311089350.1 serine hydroxymethyltransferase -
  RHP75_RS17780 (RHP75_17780) - 3737360..3737731 (+) 372 WP_090376549.1 PilZ domain-containing protein -
  RHP75_RS17785 (RHP75_17785) radA 3737775..3739139 (-) 1365 WP_311089351.1 DNA repair protein RadA Machinery gene
  RHP75_RS17790 (RHP75_17790) - 3739208..3739486 (-) 279 WP_311089352.1 DUF465 domain-containing protein -
  RHP75_RS17795 (RHP75_17795) - 3739571..3739813 (-) 243 WP_311089353.1 YdcH family protein -
  RHP75_RS17800 (RHP75_17800) - 3739951..3740697 (+) 747 WP_311089354.1 EAL domain-containing protein -
  RHP75_RS17805 (RHP75_17805) mscL 3740765..3741178 (+) 414 WP_311089355.1 large-conductance mechanosensitive channel protein MscL -
  RHP75_RS17810 (RHP75_17810) - 3741293..3742318 (+) 1026 WP_311089356.1 hemolysin family protein -
  RHP75_RS17815 (RHP75_17815) - 3742322..3743095 (-) 774 WP_311089357.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48676.33 Da        Isoelectric Point: 6.8314

>NTDB_id=880581 RHP75_RS17785 WP_311089351.1 3737775..3739139(-) (radA) [Pseudomonas sp. SG20056]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETLLEANAATPSGRAGWAGDQVQIKTLAEVSVEEVPRFSTASGELD
RVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIAT
ARMEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEG
ESDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVTNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHMAN
PRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVISSLRNKPLPHDLLVFGEVGLSGE
IRPVPSGQERLKEAAKHGFKRAIVPKGNAPKDPPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=880581 RHP75_RS17785 WP_311089351.1 3737775..3739139(-) (radA) [Pseudomonas sp. SG20056]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAGTGCGGCGCCACCTTCCCGAAATGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAATACCCTAGTGGAAACCCTGCTTGAAGCCAACGCAGCCACCCCCAGCGGCCGCGCCGGCTGGGCGGGTG
ATCAGGTGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGGTGCCGCGCTTTTCCACCGCATCTGGTGAGCTGGAC
CGCGTGCTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATTGGCGGCGACCCCGGTATCGGCAAGTCGACCATCCT
GCTGCAGACCTTGTGCAATATCGCCACGCGCTTCCCCGCGCTGTATGTCACCGGTGAGGAATCCCAGCAGCAGGTGGCCA
TGCGCGCCCGCCGCCTGGGCTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCCACC
GCGCGGATGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTTACCGAGCAGCTGCAGTCGGCTCCCGG
CGGTGTCGCCCAGGTGCGCGAAAGTGCGGCGTTGCTGGTGCGCTTTGCCAAGCAGAGCGGCACGGCGATTTTCCTGGTCG
GGCACGTGACCAAGGAAGGTGCACTGGCCGGACCGCGTGTGCTTGAGCATATGGTCGACACCGTGCTGTATTTCGAGGGT
GAATCCGATGGCCGCCTGCGCCTGCTGCGCGCGGTGAAGAATCGCTTTGGCGCGATCAATGAACTGGGCGTGTTCGGCAT
GACCGACAAGGGCCTGAAAGAGGTCACCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAAGAAGTCCCCGGCAGCG
TGGTGATGGCCACCTGGGAAGGCACCCGACCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACACCAGCCATATGGCCAAC
CCGCGCCGCGTCACCCTGGGCCTGGATCAGAATCGTCTGGCCATGCTGCTGGCTGTGTTGCACCGGCATGGCGGCATCCC
AACCTATGATCAGGACGTATTTCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCATCCGATCTGGCGCTGATGG
CCGCGGTGATTTCCAGCCTGCGCAACAAGCCGCTACCGCATGACCTGCTGGTGTTTGGCGAGGTCGGCCTGTCTGGCGAG
ATTCGCCCGGTGCCCAGCGGCCAGGAACGTCTGAAAGAGGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAAGGG
CAATGCGCCGAAAGATCCGCCGCCAGGGTTGCAGGTGATTGCCGTCACGCGCCTGGAGCAAGCGCTGGATGCCCTGTTCG
AGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.489
  radA Streptococcus mitis SK321

47.473

100

0.476
  radA Streptococcus mitis NCTC 12261

47.253

100

0.474
  radA Streptococcus pneumoniae Rx1

47.253

100

0.474
  radA Streptococcus pneumoniae D39

47.253

100

0.474
  radA Streptococcus pneumoniae R6

47.253

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.253

100

0.474