Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RHP70_RS15465 Genome accession   NZ_CP134496
Coordinates   2991747..2992388 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus sp. SG20001     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2986747..2997388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP70_RS15430 (RHP70_15430) - 2987873..2988304 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  RHP70_RS15435 (RHP70_15435) - 2988304..2988645 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  RHP70_RS15440 (RHP70_15440) - 2988638..2990116 (+) 1479 WP_024423317.1 Na+/H+ antiporter subunit D -
  RHP70_RS15445 (RHP70_15445) - 2990123..2990602 (+) 480 WP_024423318.1 Na+/H+ antiporter subunit E -
  RHP70_RS15450 (RHP70_15450) - 2990602..2990883 (+) 282 WP_024423319.1 Na(+)/H(+) antiporter subunit F1 -
  RHP70_RS15455 (RHP70_15455) mnhG 2990867..2991241 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  RHP70_RS15460 (RHP70_15460) - 2991334..2991723 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  RHP70_RS15465 (RHP70_15465) comA 2991747..2992388 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  RHP70_RS15470 (RHP70_15470) comP 2992469..2994781 (-) 2313 WP_270127242.1 ATP-binding protein Regulator
  RHP70_RS15475 (RHP70_15475) - 2994844..2995011 (-) 168 WP_080696376.1 competence pheromone ComX -
  RHP70_RS15480 (RHP70_15480) - 2995008..2995922 (-) 915 WP_311164596.1 polyprenyl synthetase family protein -
  RHP70_RS15485 (RHP70_15485) degQ 2996074..2996214 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  RHP70_RS15490 (RHP70_15490) - 2996720..2997076 (+) 357 WP_024425946.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=880507 RHP70_RS15465 WP_024423322.1 2991747..2992388(-) (comA) [Bacillus sp. SG20001]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=880507 RHP70_RS15465 WP_024423322.1 2991747..2992388(-) (comA) [Bacillus sp. SG20001]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAGTACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723