Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   RHP70_RS12015 Genome accession   NZ_CP134496
Coordinates   2355419..2356489 (-) Length   356 a.a.
NCBI ID   WP_241743547.1    Uniprot ID   -
Organism   Bacillus sp. SG20001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2350419..2361489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP70_RS11965 (RHP70_11965) sipW 2350507..2351079 (-) 573 WP_024422971.1 signal peptidase I SipW -
  RHP70_RS11970 (RHP70_11970) tapA 2351132..2351659 (-) 528 WP_311164125.1 amyloid fiber anchoring/assembly protein TapA -
  RHP70_RS11975 (RHP70_11975) - 2351959..2352237 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  RHP70_RS11980 (RHP70_11980) - 2352271..2352465 (-) 195 WP_056767455.1 YqzE family protein -
  RHP70_RS11985 (RHP70_11985) - 2352532..2352915 (-) 384 WP_197172668.1 competence type IV pilus minor pilin ComGG -
  RHP70_RS11990 (RHP70_11990) comGF 2352912..2353439 (-) 528 WP_311164128.1 competence type IV pilus minor pilin ComGF -
  RHP70_RS11995 (RHP70_11995) comGE 2353351..2353665 (-) 315 WP_087978326.1 competence type IV pilus minor pilin ComGE -
  RHP70_RS12000 (RHP70_12000) comGD 2353649..2354095 (-) 447 WP_197172667.1 competence type IV pilus minor pilin ComGD -
  RHP70_RS12005 (RHP70_12005) comGC 2354088..2354381 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  RHP70_RS12010 (RHP70_12010) comGB 2354398..2355438 (-) 1041 WP_197172666.1 competence type IV pilus assembly protein ComGB -
  RHP70_RS12015 (RHP70_12015) comGA 2355419..2356489 (-) 1071 WP_241743547.1 competence type IV pilus ATPase ComGA Machinery gene
  RHP70_RS12020 (RHP70_12020) - 2356666..2357541 (-) 876 WP_024422979.1 STAS domain-containing protein -
  RHP70_RS12030 (RHP70_12030) - 2357765..2358145 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  RHP70_RS12035 (RHP70_12035) - 2358358..2358600 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  RHP70_RS12040 (RHP70_12040) - 2358648..2359286 (-) 639 WP_024422981.1 MBL fold metallo-hydrolase -
  RHP70_RS12045 (RHP70_12045) - 2359444..2359617 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  RHP70_RS12050 (RHP70_12050) - 2359642..2359956 (-) 315 WP_024427984.1 MTH1187 family thiamine-binding protein -
  RHP70_RS12055 (RHP70_12055) - 2360033..2361286 (-) 1254 WP_041117981.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40385.84 Da        Isoelectric Point: 9.5360

>NTDB_id=880497 RHP70_RS12015 WP_241743547.1 2355419..2356489(-) (comGA) [Bacillus sp. SG20001]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQSGSLA
VMLRKGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDVIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGERCQLYCKLNRPIRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=880497 RHP70_RS12015 WP_241743547.1 2355419..2356489(-) (comGA) [Bacillus sp. SG20001]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGGGCTTCTGATGTGCATATTGTGCC
AAAAGAAAAGGAAGCTTCGGTGTCATTTCGTGTTGATTCAGATTTAATCCAGCAGCGAACGATTGATAAAAAAAGCGGAG
AGCGGCTTATTGCACATTTTAAGTTTTTATCTTCTATGGATATCGGGGAAAAAAGGAGGCCGCAAAGTGGCTCACTAGCT
GTGATGCTAAGAAAAGGTCAAGTATTTATTCGGATGTCTACCTTGCCGACAGTGAATGATGAGAGCTTAGTGATTAGAAT
TTTACCGCAGGATCATGTTCCGAAAATAAAACATCTATCATTATTTCCGAAAGCCTCAGCCAGATTATTATCCTTTTTAA
ACCACTCGCATGGACTCATTTTATTTACTGGGCCAACAAATTCAGGGAAAACAACAACACTATATTCATTGATCCAGTTT
GCAAAAAAGAATTTTAACCGAAATATTATTACCCTTGAAGATCCTGTCGAAACAAGGAATGAAGAAGTGCTGCAGGTTCA
AGTGAATGAAAAAGCCGGCATCACGTATGCCGCTGGATTACGCGCTATATTAAGACATGATCCAGATGTGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCCAGAACGGCGATTAGAGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTCCAT
GCAAAAAATGCAAAAGGAGCCCTTTACCGCATGCTTGAATTTGGTGTCACGATGAATGAACTTGAGCAAACGATGGTTGC
GATTGCTGCCCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAAGATGTCAGCTTTACTGTAAATTAAATCGAC
CGATCAGACGAACAAATGTATTTGAACTGCTGTTTGGAAAAGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTCGGCTATTTATCAAAAAACACTTACCA
TCGCTGGGTTTATGAAGAAGCGAGTCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.407

99.438

0.64