Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RHP70_RS11955 Genome accession   NZ_CP134496
Coordinates   2349249..2349584 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus sp. SG20001     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2344249..2354584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP70_RS11935 (RHP70_11935) gcvT 2344729..2345826 (-) 1098 WP_024427995.1 glycine cleavage system aminomethyltransferase GcvT -
  RHP70_RS11940 (RHP70_11940) - 2346388..2348058 (+) 1671 WP_311164119.1 SNF2-related protein -
  RHP70_RS11945 (RHP70_11945) - 2348073..2348869 (+) 797 Protein_2315 YqhG family protein -
  RHP70_RS11950 (RHP70_11950) - 2349051..2349215 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  RHP70_RS11955 (RHP70_11955) sinR 2349249..2349584 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  RHP70_RS11960 (RHP70_11960) tasA 2349652..2350452 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  RHP70_RS11965 (RHP70_11965) sipW 2350507..2351079 (-) 573 WP_024422971.1 signal peptidase I SipW -
  RHP70_RS11970 (RHP70_11970) tapA 2351132..2351659 (-) 528 WP_311164125.1 amyloid fiber anchoring/assembly protein TapA -
  RHP70_RS11975 (RHP70_11975) - 2351959..2352237 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  RHP70_RS11980 (RHP70_11980) - 2352271..2352465 (-) 195 WP_056767455.1 YqzE family protein -
  RHP70_RS11985 (RHP70_11985) - 2352532..2352915 (-) 384 WP_197172668.1 competence type IV pilus minor pilin ComGG -
  RHP70_RS11990 (RHP70_11990) comGF 2352912..2353439 (-) 528 WP_311164128.1 competence type IV pilus minor pilin ComGF -
  RHP70_RS11995 (RHP70_11995) comGE 2353351..2353665 (-) 315 WP_087978326.1 competence type IV pilus minor pilin ComGE -
  RHP70_RS12000 (RHP70_12000) comGD 2353649..2354095 (-) 447 WP_197172667.1 competence type IV pilus minor pilin ComGD -
  RHP70_RS12005 (RHP70_12005) comGC 2354088..2354381 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=880495 RHP70_RS11955 WP_024422969.1 2349249..2349584(+) (sinR) [Bacillus sp. SG20001]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=880495 RHP70_RS11955 WP_024422969.1 2349249..2349584(+) (sinR) [Bacillus sp. SG20001]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946