Detailed information NTG0880386

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RJW51_RS07460
• Genome accession: NZ_CP134491
• Coordinates: 1455246..1457699 (+)
• Length: 817 a.a.
• NCBI ID: WP_172089693.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain 1628469
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1450246..1462699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJW51_RS07420 (RJW51_07405)	rpmG	1450426..1450578 (+)	153	WP_032512074.1	50S ribosomal protein L33	-
RJW51_RS07425 (RJW51_07410)	secE	1450588..1450764 (+)	177	WP_024391629.1	preprotein translocase subunit SecE	-
RJW51_RS07430 (RJW51_07415)	nusG	1450918..1451457 (+)	540	WP_002940254.1	transcription termination/antitermination protein NusG	-
RJW51_RS07440 (RJW51_07425)	rpsB	1452072..1452848 (+)	777	WP_024391631.1	30S ribosomal protein S2	-
RJW51_RS07445 (RJW51_07430)	tsf	1453100..1454140 (+)	1041	WP_172089692.1	translation elongation factor Ts	-
RJW51_RS07450 (RJW51_07435)	traF	1454300..1454638 (-)	339	WP_024396361.1	conjugal transfer protein TraF	-
RJW51_RS07455 (RJW51_07440)	-	1454782..1455240 (+)	459	WP_024391634.1	CtsR family transcriptional regulator	-
RJW51_RS07460 (RJW51_07445)	clpC	1455246..1457699 (+)	2454	WP_172089693.1	AAA family ATPase	Regulator
RJW51_RS07465 (RJW51_07450)	-	1457828..1458865 (+)	1038	WP_172089694.1	AAA family ATPase	-
RJW51_RS07470 (RJW51_07455)	pnuC	1458875..1459690 (+)	816	WP_397610456.1	nicotinamide riboside transporter PnuC	-
RJW51_RS07475 (RJW51_07460)	-	1459683..1460465 (+)	783	WP_172006492.1	NUDIX domain-containing protein	-
RJW51_RS07480 (RJW51_07465)	dusB	1460499..1461503 (-)	1005	WP_172089695.1	tRNA dihydrouridine synthase DusB	-
RJW51_RS07485 (RJW51_07470)	hslO	1461496..1462362 (-)	867	WP_172028519.1	Hsp33 family molecular chaperone HslO	-

Sequence

Protein

• Length: 817 a.a.
• Molecular weight: 90699.02 Da
• Isoelectric Point: 5.6531

>NTDB_id=880386 RJW51_RS07460 WP_172089693.1 1455246..1457699(+) (clpC) [Streptococcus parasuis strain 1628469]
MKISTGLQRVFEDAQLIAQRYACDHLETWHILLAFVINHDTVAGAVLAEYPMSISDFEHATFVVTEKVYREELDNFNILP
SSKRLDDTAQFARKIAEVVKAKELGSEHLFQAMLLDKRSTASQILDKVGFHFEEIEDEFRFVDLRKNLEYRAGFTKEDLK
AIRSVMKGGKAKTASVGQMMGMPPTAQSGGLEDYTRDLTALAREGKIEPIIGRDAEISRMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAEGDVPVSLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGDATV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQAEETGLTSIDKALMAGNYKTVSKLLIKTTEKNLLSQNDDLEV
TEDDILETLSRLSGIPVAKLSQSDTKKYLNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGHRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNLLL
QVLDDGVLTDSKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGAADLSKDHKEVEKRIFEELKKTYRPEFINRIDEKVVF
HSLTESDMLDVVKVMVKPLIVVAASKGIHLKFQPSALKLLAKEGYDPEMGARPLRRLLQTKLEDPMAEMLLREDLRAGMV
LKVGVKANQLKFESVNE

Nucleotide

• Length: 2454 bp

>NTDB_id=880386 RJW51_RS07460 WP_172089693.1 1455246..1457699(+) (clpC) [Streptococcus parasuis strain 1628469]
ATGAAAATTTCAACAGGCTTACAACGGGTTTTTGAAGATGCTCAGTTGATTGCCCAACGGTATGCATGCGATCATTTAGA
AACGTGGCATATTTTGCTAGCATTTGTCATCAATCACGATACGGTAGCTGGTGCTGTTTTGGCAGAATACCCAATGAGTA
TTTCAGATTTCGAACATGCTACTTTTGTTGTTACAGAAAAAGTATACCGTGAAGAATTGGATAATTTTAATATTCTACCC
TCCTCAAAGAGATTAGACGATACAGCTCAGTTCGCTAGAAAGATTGCAGAAGTCGTTAAGGCAAAAGAATTAGGAAGCGA
GCATTTGTTTCAGGCAATGCTGTTAGACAAACGTTCGACCGCAAGTCAAATTCTAGATAAAGTAGGTTTTCATTTTGAAG
AGATAGAAGATGAATTCCGTTTTGTTGATTTGCGTAAAAACTTAGAGTATCGTGCAGGATTCACCAAAGAAGATTTGAAA
GCTATCCGTAGCGTGATGAAAGGTGGAAAGGCTAAAACAGCAAGTGTAGGTCAAATGATGGGCATGCCACCAACTGCTCA
AAGTGGTGGATTGGAGGATTATACACGAGATCTGACAGCCTTAGCCCGCGAGGGGAAAATTGAACCTATTATTGGTCGCG
ATGCTGAAATTTCACGGATGATTCAAATTCTATCACGTAAAACGAAGAACAATCCTGTTTTGGTTGGCGATGCAGGTGTT
GGGAAAACAGCACTAGCGTTAGGTCTTGCTCAGCGTGTTGCAGAAGGAGATGTTCCTGTCAGTTTAGCAAAGATGCGTGT
TTTGGAACTTGACTTGATGAATGTTATTGCAGGAACTCGTTTTCGTGGTGACTTTGAAGAGCGGATGAATAATATCATCA
ATGATATTGAAGAAGATGGTCAGGTTATCCTCTTCATTGATGAATTGCATACTATTATGGGTTCGGGTTCGGGAATTGAT
TCAACCCTAGATGCTGCCAATATTCTCAAACCGGCCTTGGCTCGAGGGACCCTACGCACTGTTGGTGCAACAACACAGGA
TGAATACCAAAAGCATATTGAAAAAGATGCTGCTTTGGTCCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTTG
AGGACAGTATTGCGATTTTGACAGGGCTTAAAGGAACTTTTGAAAAATACCATAGGGTCCGTATTGGAGATGCGACTGTT
GAGACAGCTGTGACTTACGCCAAGAGGTATCTGACTAGTAAAAACTTGCCAGACTCAGCAATTGACTTGTTAGATGAAGC
CAGTGCAACGGTACAAAATCGAGTAAAAGGGCAGGCTGAGGAAACAGGACTGACGAGCATAGACAAGGCCTTGATGGCTG
GAAACTACAAGACTGTCAGTAAGCTCTTAATCAAGACTACAGAAAAGAATCTGTTGAGTCAAAACGATGACTTAGAAGTG
ACAGAAGATGACATTTTGGAAACACTTAGTCGCTTATCAGGTATCCCAGTAGCCAAGCTCAGCCAATCAGATACTAAGAA
GTACCTGAATCTGGAAGCAGAATTGCACAAACGTGTGATTGGGCAGGAAGAAGCTATTTCTGCCGTTAGTAGAGCTATCC
GCCGTAATCAGTCGGGGATTCGGACAGGTCACAGACCGATTGGTTCCTTTATGTTCTTAGGACCAACTGGTGTCGGTAAG
ACTGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGCTATGTTGGCTATGAAGAAGGTGGTGAATTAACAGAAA
AAGTTCGTAATAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATCTTCTCTTG
CAGGTCTTGGATGACGGTGTTTTGACCGATAGTAAGGGTCGCAAGGTTGATTTCTCCAATACAGTCATTATCATGACATC
AAACTTGGGAGCAACAGCTCTTCGCGATGACAAGACTGTTGGGTTTGGTGCGGCTGATCTGTCCAAAGACCACAAGGAAG
TGGAGAAACGCATTTTTGAAGAATTGAAAAAGACCTATCGTCCTGAATTTATCAACCGTATCGATGAAAAGGTAGTCTTC
CACAGCTTGACAGAATCCGATATGTTGGATGTTGTCAAAGTGATGGTGAAGCCATTGATTGTGGTTGCCGCGAGCAAGGG
AATCCACCTGAAATTCCAACCATCAGCCCTCAAATTGTTGGCCAAAGAAGGCTACGATCCAGAAATGGGTGCTCGCCCTC
TTCGTCGGTTGCTCCAAACAAAATTGGAAGACCCGATGGCAGAAATGCTTTTGCGTGAAGATCTTAGAGCAGGTATGGTT
CTGAAAGTGGGTGTCAAAGCTAACCAACTCAAATTTGAGAGTGTGAATGAATAG

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-801)

• ATPase family associated with various cellular activities (AAA) (AAA) (233-365)

• AAA lid domain (AAA_lid_9) (372-450)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (102-137)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-49)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae D39	70.762	99.633	0.705
clpC	Streptococcus pneumoniae Rx1	70.762	99.633	0.705
clpC	Streptococcus pneumoniae TIGR4	70.639	99.633	0.704
clpC	Streptococcus mutans UA159	65.848	99.633	0.656
clpC	Streptococcus thermophilus LMG 18311	65.319	99.878	0.652
clpC	Streptococcus thermophilus LMD-9	65.074	99.878	0.65
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.259	100	0.492
clpC	Bacillus subtilis subsp. subtilis str. 168	43.099	100	0.436