Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RJW51_RS05265 Genome accession   NZ_CP134491
Coordinates   1043304..1044017 (-) Length   237 a.a.
NCBI ID   WP_024391755.1    Uniprot ID   A0A6L8MWM2
Organism   Streptococcus parasuis strain 1628469     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038304..1049017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS05245 (RJW51_05230) trxA 1038979..1039293 (-) 315 WP_171989544.1 thioredoxin -
  RJW51_RS05250 (RJW51_05235) - 1039557..1041890 (-) 2334 WP_172089576.1 endonuclease MutS2 -
  RJW51_RS05255 (RJW51_05240) - 1042384..1042932 (-) 549 WP_024396959.1 CvpA family protein -
  RJW51_RS05260 (RJW51_05245) - 1042929..1043246 (-) 318 WP_024391756.1 hypothetical protein -
  RJW51_RS05265 (RJW51_05250) treR 1043304..1044017 (-) 714 WP_024391755.1 trehalose operon repressor Regulator
  RJW51_RS05270 (RJW51_05255) treP 1044248..1046248 (+) 2001 WP_172089575.1 PTS system trehalose-specific EIIBC component -
  RJW51_RS05275 (RJW51_05260) treC 1046327..1047952 (+) 1626 WP_172089574.1 alpha,alpha-phosphotrehalase -
  RJW51_RS05280 (RJW51_05265) - 1048002..1048379 (+) 378 WP_397610511.1 iron chaperone -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27563.54 Da        Isoelectric Point: 6.5135

>NTDB_id=880365 RJW51_RS05265 WP_024391755.1 1043304..1044017(-) (treR) [Streptococcus parasuis strain 1628469]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPISGLT
SYQELTDALQLQSDTAVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRSIDGKVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=880365 RJW51_RS05265 WP_024391755.1 1043304..1044017(-) (treR) [Streptococcus parasuis strain 1628469]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATGTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACAGGAATTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAGCGGTTGTTGATTTGGAGCTCATTACAGTAAATAG
TAATTTATCTCAGTTAACAGGATTTGAACCATTTAGTAAAGTATGGAAAATTGTACGTACAAGGTCCATAGATGGAAAGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCGAAGATGGATAAAGAAATCGCAAAAGGTTCCATTTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCTTATGCTCAAAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAGGTGATACACAACAATTTC
AATATACTGAAAGCAAACATAAAATAGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8MWM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.855

98.734

0.502