Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RJW51_RS04940 Genome accession   NZ_CP134491
Coordinates   976795..977529 (-) Length   244 a.a.
NCBI ID   WP_172054909.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 971795..982529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS04915 (RJW51_04900) - 972731..973585 (-) 855 WP_172089614.1 helix-turn-helix domain-containing protein -
  RJW51_RS04920 (RJW51_04905) rpmB 973888..974076 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  RJW51_RS04925 (RJW51_04910) trmB 974279..974917 (-) 639 WP_172089613.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RJW51_RS04930 (RJW51_04915) ccrZ 974914..975708 (-) 795 WP_172089612.1 cell cycle regulator CcrZ -
  RJW51_RS04935 (RJW51_04920) - 975758..976798 (-) 1041 WP_172089611.1 ABC transporter permease -
  RJW51_RS04940 (RJW51_04925) pptA 976795..977529 (-) 735 WP_172054909.1 ATP-binding cassette domain-containing protein Regulator
  RJW51_RS04945 (RJW51_04930) - 977592..978005 (+) 414 WP_130555357.1 HIT family protein -
  RJW51_RS04950 (RJW51_04935) - 978007..978312 (+) 306 WP_172054910.1 chemotaxis protein -
  RJW51_RS04955 (RJW51_04940) brpA 978449..979624 (-) 1176 WP_172089610.1 biofilm formation/cell division transcriptional regulator BrpA -
  RJW51_RS04960 (RJW51_04945) - 979621..980148 (-) 528 WP_024396988.1 GNAT family N-acetyltransferase -
  RJW51_RS04965 (RJW51_04950) tsaE 980141..980581 (-) 441 WP_024404749.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RJW51_RS04970 (RJW51_04955) - 980687..982351 (-) 1665 WP_172089609.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27119.50 Da        Isoelectric Point: 4.6747

>NTDB_id=880364 RJW51_RS04940 WP_172054909.1 976795..977529(-) (pptA) [Streptococcus parasuis strain 1628469]
MLEVKNITGGYINIPVLKDVSFTVENGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYNLTWDQAWSRVQGLLTIFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIIDEPF
LGLDPVAISDLVNLLEEEKAKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=880364 RJW51_RS04940 WP_172054909.1 976795..977529(-) (pptA) [Streptococcus parasuis strain 1628469]
ATGTTAGAAGTAAAAAATATCACAGGAGGCTACATCAATATTCCCGTATTGAAAGATGTATCTTTCACTGTTGAGAACGG
TCAGTTAGTTGGCTTGATTGGATTGAATGGTGCTGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATCCCT
GAAACACCTAGTTTGTATGAGGAATTGACACTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATAATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGATTTTTCGGTTGGATGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATTATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTATTGATGAGCCGTTT
TTAGGGCTGGATCCTGTAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAGGAACTTCAATTCTGAT
GTCTACTCATGTTCTTGACTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAGCATGCTTTTAACATGAAAGGTGCAAGTCTTAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.711

97.951

0.693
  pptA Streptococcus thermophilus LMD-9

69.456

97.951

0.68