Detailed information NTG0880361

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: RJW51_RS04050
• Genome accession: NZ_CP134491
• Coordinates: 789771..792014 (+)
• Length: 747 a.a.
• NCBI ID: WP_172090001.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain 1628469
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 784771..797014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJW51_RS04025 (RJW51_04010)	-	785708..786616 (+)	909	WP_172090002.1	neutral zinc metallopeptidase	-
RJW51_RS04030 (RJW51_04015)	-	786696..787547 (-)	852	WP_172065499.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	-
RJW51_RS04035 (RJW51_04020)	-	787676..788410 (-)	735	WP_172016423.1	amino acid ABC transporter ATP-binding protein	-
RJW51_RS04040 (RJW51_04025)	-	788412..789092 (-)	681	WP_024392449.1	amino acid ABC transporter permease	-
RJW51_RS04045 (RJW51_04030)	-	789211..789441 (-)	231	WP_172039208.1	DUF1797 family protein	-
RJW51_RS04050 (RJW51_04035)	clpE	789771..792014 (+)	2244	WP_172090001.1	AAA family ATPase	Regulator
RJW51_RS04055 (RJW51_04040)	-	792158..792625 (+)	468	WP_172090000.1	NUDIX hydrolase	-
RJW51_RS04060 (RJW51_04045)	-	792672..792980 (+)	309	WP_024396912.1	DUF1827 family protein	-
RJW51_RS04065 (RJW51_04050)	-	793268..794558 (+)	1291	Protein_808	IS4 family transposase	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 83266.67 Da
• Isoelectric Point: 5.2838

>NTDB_id=880361 RJW51_RS04050 WP_172090001.1 789771..792014(+) (clpE) [Streptococcus parasuis strain 1628469]
MLCTNCKINDATIHLYTNMNGKQQQVDLCHNCYQIMKTDPNNAILRGLGDLSNPNNMDPFSEFFNHLSGYPGNTPAGKNR
DQTPPTQAGGGNGGGRFNQPNAGRTQTVPQPNGLLEEFGINVTEIARRGDIDPVIGRDQEITRVIEILNRRTKNNPVLIG
EPGVGKTAVVEGLAQKIVDGDVPHKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRNRREVILFIDEIHEIVGAG
SAGDGNMDAGNILKPALARGEMQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILKGIQNKYQDYHHVKYSP
EAIEAAAVLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDQRLIDAENRKEQATRDEDYEKAAYYRDQIAKYK
EMQKATISEEDIPLITEKEIEAIIEQKTNIPVGELKEKEQSQLIHLASDLKAHVIGQDDAVDKIAKAIRRNRVGLGAPNR
PIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILL
DEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAAMEGRTQSVLGQLGNFFTPEFMN
RFDGIIEFQPLSKENLLQIVSLMLEDVNRRLSTNGIRLHVTDKVKEKLVDLGYDPKMGARPLRRTIQDQIEDAITDFYLE
NPNEKDLRAVMTNKGTIQIKAQTPKEK

Nucleotide

• Length: 2244 bp

>NTDB_id=880361 RJW51_RS04050 WP_172090001.1 789771..792014(+) (clpE) [Streptococcus parasuis strain 1628469]
ATGCTCTGTACAAACTGTAAAATAAATGATGCTACCATTCATCTCTATACAAATATGAATGGCAAACAACAGCAAGTTGA
CCTTTGCCATAATTGTTATCAAATTATGAAAACAGATCCAAATAATGCTATTTTACGTGGCTTAGGGGACTTAAGTAATC
CAAACAATATGGATCCATTTAGTGAATTTTTCAATCATTTAAGTGGTTACCCTGGAAATACCCCAGCTGGTAAGAATCGA
GATCAAACACCTCCCACTCAAGCAGGCGGTGGCAACGGTGGTGGTCGATTCAATCAACCAAATGCTGGTCGAACCCAAAC
AGTCCCGCAACCAAATGGATTGCTGGAAGAATTTGGGATTAATGTTACTGAGATTGCACGACGTGGAGATATTGACCCCG
TTATCGGACGCGATCAAGAAATCACTCGGGTGATTGAAATTTTGAACCGCCGCACTAAAAACAACCCCGTTCTTATCGGT
GAGCCCGGTGTTGGTAAAACTGCAGTCGTTGAAGGACTAGCACAAAAAATTGTAGACGGGGACGTTCCACATAAACTTCA
AAACAAAGAAGTCATTCGATTAGATGTTGTCAGCCTTGTTCAAGGAACAGGAATCCGAGGTCAATTTGAAGAACGCATGC
AAAAACTCATGGAAGAAATTCGAAACCGACGTGAAGTTATTCTCTTCATTGATGAAATTCATGAGATTGTCGGAGCTGGT
TCTGCAGGAGATGGAAACATGGATGCGGGCAATATTCTAAAACCCGCCCTCGCTCGTGGTGAAATGCAACTGGTCGGTGC
TACTACTTTAAATGAATACCGCATTATTGAAAAAGATGCAGCTCTTGAACGTCGGATGCAACCTGTAAAAGTTGACGAAC
CTAGTGTTGAAGAAACAATCACTATCTTAAAAGGTATTCAGAATAAATACCAAGACTACCACCATGTAAAATACTCCCCT
GAGGCCATTGAAGCTGCAGCCGTATTATCCAACCGCTATATTCAAGACCGATTCTTACCTGACAAAGCGATTGATTTGCT
AGACGAAGCTGGGTCAAAAATGAACTTAACCTTGAACTTCGTGGATCCTAAAGAAATTGACCAACGGTTAATTGATGCCG
AAAATCGTAAAGAACAAGCAACTCGTGATGAAGATTACGAAAAAGCTGCCTATTATCGTGACCAAATTGCTAAATATAAA
GAAATGCAAAAGGCAACGATTAGTGAGGAGGATATTCCTCTCATTACCGAAAAAGAAATCGAAGCCATCATTGAACAAAA
AACAAATATCCCCGTTGGCGAGCTGAAAGAAAAAGAACAGTCTCAATTGATACATTTGGCAAGTGATCTCAAAGCGCATG
TCATTGGACAAGACGACGCTGTTGATAAGATTGCAAAAGCAATCCGTCGCAATCGTGTAGGACTTGGAGCACCAAATCGT
CCAATTGGTTCCTTCTTATTCGTAGGACCTACTGGCGTCGGTAAAACAGAATTATCAAAACAATTAGCCATTGAGCTCTT
CGGTTCAGCGGACAGCATGATTCGATTTGATATGTCTGAATATATGGAAAAACACGCAGTTGCAAAACTAGTCGGTGCCC
CTCCTGGATATGTGGGGTATGAAGAAGCCGGCCAACTAACAGAAAAAGTCCGTCGCAATCCATATTCACTCATTCTCCTT
GATGAAGTTGAAAAGGCGCATCCAGATGTGATGCACATGTTCCTACAAGTTCTTGATGACGGTCGACTGACAGATGGACA
AGGGCGAACAGTTAGCTTCAAAGATACCATTATCATTATGACTTCAAATGCTGGTACAGGAAAGGTAGAAGCCAGTGTGG
GATTTGGAGCCGCTATGGAAGGCCGTACACAATCTGTTCTTGGTCAACTCGGTAATTTCTTCACTCCTGAATTTATGAAC
CGCTTCGATGGAATTATTGAATTCCAACCACTATCAAAAGAAAATCTGCTCCAAATTGTCAGTCTCATGCTGGAAGACGT
CAACCGTCGCTTATCTACAAACGGTATTCGACTGCATGTGACCGATAAAGTAAAGGAAAAATTAGTTGATCTTGGTTACG
ATCCTAAAATGGGTGCACGTCCCCTTCGCAGGACCATTCAAGACCAAATTGAAGATGCCATTACCGATTTCTATTTAGAG
AATCCTAATGAGAAAGATTTACGAGCTGTCATGACCAATAAAGGCACCATCCAAATCAAAGCTCAAACGCCAAAAGAAAA
ATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (157-276)

• AAA lid domain (AAA_lid_9) (295-393)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (651-723)

• AAA domain (Cdc48 subfamily) (AAA_2) (480-643)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus pneumoniae Rx1	83.356	100	0.838
clpE	Streptococcus pneumoniae D39	83.356	100	0.838
clpE	Streptococcus pneumoniae R6	83.356	100	0.838
clpE	Streptococcus pneumoniae TIGR4	83.356	100	0.838
clpE	Streptococcus mutans UA159	83.044	100	0.833
clpC	Lactococcus lactis subsp. cremoris KW2	76.818	97.59	0.75
clpC	Bacillus subtilis subsp. subtilis str. 168	51.008	86.345	0.44
clpC	Streptococcus pneumoniae D39	47.604	83.802	0.399
clpC	Streptococcus pneumoniae Rx1	47.604	83.802	0.399
clpC	Streptococcus pneumoniae TIGR4	47.604	83.802	0.399
clpC	Streptococcus mutans UA159	47.91	83.266	0.399
clpC	Streptococcus thermophilus LMD-9	47.125	83.802	0.395
clpC	Streptococcus thermophilus LMG 18311	46.805	83.802	0.392
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.85	82.865	0.388