Detailed information NTG0880359

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: RJW51_RS03570
• Genome accession: NZ_CP134491
• Coordinates: 700090..701025 (-)
• Length: 311 a.a.
• NCBI ID: WP_024391700.1
• Uniprot ID: A0A6L8MZK2
• Organism: Streptococcus parasuis strain 1628469
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 695090..706025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJW51_RS03540 (RJW51_03525)	-	695271..696911 (-)	1641	WP_172090200.1	oligosaccharide flippase family protein	-
RJW51_RS03545 (RJW51_03530)	yghU	697166..697954 (-)	789	WP_172090198.1	glutathione-dependent disulfide-bond oxidoreductase	-
RJW51_RS03550 (RJW51_03535)	-	697963..698253 (-)	291	WP_172090197.1	hypothetical protein	-
RJW51_RS03555 (RJW51_03540)	rplA	698357..699046 (-)	690	WP_004194879.1	50S ribosomal protein L1	-
RJW51_RS03560 (RJW51_03545)	rplK	699087..699512 (-)	426	WP_024382554.1	50S ribosomal protein L11	-
RJW51_RS03565 (RJW51_03550)	-	699667..700035 (+)	369	WP_397610498.1	DUF3397 domain-containing protein	-
RJW51_RS03570 (RJW51_03555)	amiF	700090..701025 (-)	936	WP_024391700.1	ABC transporter ATP-binding protein	Regulator
RJW51_RS03575 (RJW51_03560)	oppD	701022..702065 (-)	1044	WP_024391701.1	ABC transporter ATP-binding protein	Regulator
RJW51_RS03580 (RJW51_03565)	-	702080..703111 (-)	1032	WP_172040098.1	ABC transporter permease subunit	-
RJW51_RS03585 (RJW51_03570)	-	703122..704036 (-)	915	WP_172090196.1	ABC transporter permease subunit	-
RJW51_RS03590 (RJW51_03575)	-	704100..705746 (-)	1647	WP_172090195.1	ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35025.72 Da
• Isoelectric Point: 6.0122

>NTDB_id=880359 RJW51_RS03570 WP_024391700.1 700090..701025(-) (amiF) [Streptococcus parasuis strain 1628469]
MSENRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTSSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPIHPYTKSLLSAIPEPDPEFEKNRVHVEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=880359 RJW51_RS03570 WP_024391700.1 700090..701025(-) (amiF) [Streptococcus parasuis strain 1628469]
ATGAGCGAAAATAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTTTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CGGTTGGCCGTACCATTCTAAAGTTGTATGATTATAATGCTGGTGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGCTTGACTTCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTTTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATTGCTGACGAACCAATCTCAGCCTTAGATGTATC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTATCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCAATTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAAA
TCGTGTCCATGTGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAATAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

3D structure

• AlphaFold DB: A0A6L8MZK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.922	99.035	0.524
amiF	Streptococcus thermophilus LMG 18311	52.597	99.035	0.521
amiF	Streptococcus salivarius strain HSISS4	52.273	99.035	0.518