Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AABD45_RS08685 Genome accession   NZ_CP150831
Coordinates   1880173..1880799 (-) Length   208 a.a.
NCBI ID   WP_011078149.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875173..1885799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS08670 (AABD45_09210) - 1875886..1876158 (-) 273 WP_013572181.1 HU family DNA-binding protein -
  AABD45_RS08675 (AABD45_09215) lon 1876352..1878703 (-) 2352 WP_017420949.1 endopeptidase La -
  AABD45_RS08680 (AABD45_09220) clpX 1878822..1880102 (-) 1281 WP_017420950.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  AABD45_RS08685 (AABD45_09225) clpP 1880173..1880799 (-) 627 WP_011078149.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AABD45_RS08690 (AABD45_09230) tig 1880905..1882203 (-) 1299 WP_011149844.1 trigger factor -
  AABD45_RS08695 (AABD45_09235) - 1882764..1884551 (+) 1788 WP_406848916.1 ATP-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22952.31 Da        Isoelectric Point: 5.0212

>NTDB_id=880346 AABD45_RS08685 WP_011078149.1 1880173..1880799(-) (clpP) [Vibrio vulnificus strain Per1]
MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
TKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVLTHRSA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=880346 AABD45_RS08685 WP_011078149.1 1880173..1880799(-) (clpP) [Vibrio vulnificus strain Per1]
ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATCATCGACGCACTAGTACCAATGGTGGTTGAACAAACTTCCCGTGG
TGAACGTTCTTACGATATTTATTCGCGTTTGCTAAAAGAGCGAGTGATTTTCCTCACCGGACAAGTTGAAGACCACATGG
CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAGTCTGAGAACCCAGACAAAGATATCTTCCTTTACATTAACTCTCCA
GGTGGCAGCGTGACAGCAGGGATGTCGATTTACGACACAATGCAGTTCATCAAGCCAAATGTGAGCACAGTATGTATGGG
TCAAGCATGTTCAATGGGTGCATTTTTGCTTGCTGGTGGTGCACCAGGTAAGCGTTATGTGCTACCTAACTCACGTGTGA
TGATTCACCAGCCACTCGGTGGTTTCCAAGGTCAAGCGTCAGACATCCAAATTCATGCTCAGGAAATTCTTACAATTAAG
ACTAAACTGAACAAGCTGTTGGCAGAACACACTGGCCAACCTTTGGAAGTGATTGAGCGTGATACTGATCGCGATAATTT
TATGTCGGCAGATCAGGCAGTAGAATACGGTTTGGTGGACGCAGTATTGACTCATCGTAGTGCATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.526

91.346

0.644
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.894

90.385

0.587
  clpP Streptococcus pneumoniae R6

54.124

93.269

0.505
  clpP Streptococcus pneumoniae TIGR4

54.124

93.269

0.505
  clpP Streptococcus pneumoniae D39

54.124

93.269

0.505
  clpP Streptococcus pneumoniae Rx1

54.124

93.269

0.505
  clpP Lactococcus lactis subsp. cremoris KW2

52.062

93.269

0.486
  clpP Streptococcus thermophilus LMG 18311

52.604

92.308

0.486
  clpP Streptococcus thermophilus LMD-9

52.604

92.308

0.486
  clpP Streptococcus mutans UA159

51.813

92.788

0.481
  clpP Streptococcus pyogenes JRS4

52.105

91.346

0.476
  clpP Streptococcus pyogenes MGAS315

52.105

91.346

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.515

93.269

0.471