Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RJW54_RS06680 Genome accession   NZ_CP134487
Coordinates   1347693..1348496 (-) Length   267 a.a.
NCBI ID   WP_172015546.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342693..1353496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS06660 (RJW54_06640) - 1342760..1343806 (-) 1047 WP_024394416.1 D-alanine--D-alanine ligase -
  RJW54_RS06665 (RJW54_06645) recR 1343911..1344507 (-) 597 WP_002935848.1 recombination mediator RecR -
  RJW54_RS06670 (RJW54_06650) pbp2b 1344516..1346591 (-) 2076 WP_024394417.1 penicillin-binding protein PBP2B -
  RJW54_RS06675 (RJW54_06655) - 1346683..1347132 (-) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  RJW54_RS06680 (RJW54_06660) vicX 1347693..1348496 (-) 804 WP_172015546.1 MBL fold metallo-hydrolase Regulator
  RJW54_RS06685 (RJW54_06665) micB 1348503..1349852 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJW54_RS06690 (RJW54_06670) micA 1349845..1350549 (-) 705 WP_002935840.1 response regulator YycF Regulator
  RJW54_RS06695 (RJW54_06675) - 1350743..1351504 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  RJW54_RS06700 (RJW54_06680) - 1351515..1352354 (+) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  RJW54_RS06705 (RJW54_06685) - 1352369..1353067 (+) 699 WP_002935835.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29717.79 Da        Isoelectric Point: 5.5533

>NTDB_id=880273 RJW54_RS06680 WP_172015546.1 1347693..1348496(-) (vicX) [Streptococcus suis strain MY1C3_3B]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELDAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=880273 RJW54_RS06680 WP_172015546.1 1347693..1348496(-) (vicX) [Streptococcus suis strain MY1C3_3B]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGATGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768