Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RJW54_RS06165 Genome accession   NZ_CP134487
Coordinates   1233736..1234677 (-) Length   313 a.a.
NCBI ID   WP_024394671.1    Uniprot ID   A0A0N0DP25
Organism   Streptococcus suis strain MY1C3_3B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1228736..1239677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS06140 (RJW54_06120) prsA 1228842..1229843 (-) 1002 WP_024394667.1 peptidylprolyl isomerase PrsA -
  RJW54_RS06145 (RJW54_06125) - 1229904..1230623 (-) 720 WP_043032894.1 O-methyltransferase -
  RJW54_RS06150 (RJW54_06130) - 1230698..1231246 (-) 549 WP_002938103.1 DUF6630 family protein -
  RJW54_RS06155 (RJW54_06135) - 1231262..1231702 (-) 441 WP_024394669.1 hypothetical protein -
  RJW54_RS06160 (RJW54_06140) pepF 1231704..1233506 (-) 1803 WP_024394670.1 oligoendopeptidase F Regulator
  RJW54_RS06165 (RJW54_06145) coiA 1233736..1234677 (-) 942 WP_024394671.1 competence protein CoiA Machinery gene
  RJW54_RS06170 (RJW54_06150) metG 1234738..1236741 (-) 2004 WP_024394672.1 methionine--tRNA ligase -
  RJW54_RS06175 (RJW54_06155) - 1236898..1237491 (+) 594 WP_024394673.1 DUF1361 domain-containing protein -
  RJW54_RS06180 (RJW54_06160) - 1237791..1238828 (+) 1038 WP_024394674.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36357.95 Da        Isoelectric Point: 7.8958

>NTDB_id=880271 RJW54_RS06165 WP_024394671.1 1233736..1234677(-) (coiA) [Streptococcus suis strain MY1C3_3B]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNDRLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTRTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=880271 RJW54_RS06165 WP_024394671.1 1233736..1234677(-) (coiA) [Streptococcus suis strain MY1C3_3B]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCACAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCTGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTCAATGATCGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAGAAGGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCAGAGGGGAGAATTTGCTGACAAGGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0DP25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425