Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RJW54_RS01225 Genome accession   NZ_CP134487
Coordinates   231994..232707 (+) Length   237 a.a.
NCBI ID   WP_044768943.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 226994..237707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS01215 (RJW54_01215) treC 227801..229426 (-) 1626 WP_172015513.1 alpha,alpha-phosphotrehalase -
  RJW54_RS01220 (RJW54_01220) treP 229766..231760 (-) 1995 WP_172015512.1 PTS system trehalose-specific EIIBC component -
  RJW54_RS01225 (RJW54_01225) treR 231994..232707 (+) 714 WP_044768943.1 trehalose operon repressor Regulator
  RJW54_RS01230 (RJW54_01230) - 232765..233076 (+) 312 WP_029180113.1 hypothetical protein -
  RJW54_RS01235 (RJW54_01235) - 233073..233621 (+) 549 WP_002935945.1 CvpA family protein -
  RJW54_RS01240 (RJW54_01240) - 234042..236375 (+) 2334 WP_002935942.1 endonuclease MutS2 -
  RJW54_RS01245 (RJW54_01245) - 236399..237052 (+) 654 WP_024406824.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27230.09 Da        Isoelectric Point: 6.7422

>NTDB_id=880255 RJW54_RS01225 WP_044768943.1 231994..232707(+) (treR) [Streptococcus suis strain MY1C3_3B]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTTIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=880255 RJW54_RS01225 WP_044768943.1 231994..232707(+) (treR) [Streptococcus suis strain MY1C3_3B]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAGAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCGGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTATGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTACTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515