Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RJW49_RS09570 Genome accession   NZ_CP134477
Coordinates   1894263..1895630 (-) Length   455 a.a.
NCBI ID   WP_074393399.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1887251..1899919 1894263..1895630 within 0


Gene organization within MGE regions


Location: 1887251..1899919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS09520 (RJW49_09520) - 1887251..1887751 (+) 501 WP_014736479.1 NUDIX domain-containing protein -
  RJW49_RS09525 (RJW49_09525) - 1887740..1888030 (-) 291 WP_024405280.1 hypothetical protein -
  RJW49_RS09530 (RJW49_09530) - 1888177..1888221 (+) 45 Protein_1841 MerR family transcriptional regulator -
  RJW49_RS09535 (RJW49_09535) - 1888302..1888451 (+) 150 WP_014736480.1 DUF5320 domain-containing protein -
  RJW49_RS09540 (RJW49_09540) gltX 1888492..1889946 (-) 1455 WP_014736481.1 glutamate--tRNA ligase -
  RJW49_RS09545 (RJW49_09545) - 1890018..1891298 (-) 1281 WP_014736482.1 MFS transporter -
  RJW49_RS09550 (RJW49_09550) - 1891390..1892049 (-) 660 WP_014736483.1 hypothetical protein -
  RJW49_RS09555 (RJW49_09555) - 1892054..1892500 (-) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  RJW49_RS09560 (RJW49_09560) - 1892678..1893436 (-) 759 WP_014736484.1 TIGR00266 family protein -
  RJW49_RS09565 (RJW49_09565) - 1893645..1894139 (-) 495 WP_014736485.1 carbonic anhydrase -
  RJW49_RS09570 (RJW49_09570) radA 1894263..1895630 (-) 1368 WP_074393399.1 DNA repair protein RadA Machinery gene
  RJW49_RS09575 (RJW49_09575) - 1895637..1896170 (-) 534 WP_014736487.1 histidine phosphatase family protein -
  RJW49_RS09580 (RJW49_09580) - 1896177..1896620 (-) 444 WP_014736488.1 dUTP diphosphatase -
  RJW49_RS09585 (RJW49_09585) - 1896640..1897626 (-) 987 WP_014736489.1 virulence RhuM family protein -
  RJW49_RS09590 (RJW49_09590) - 1897645..1897815 (-) 171 WP_014736490.1 hypothetical protein -
  RJW49_RS09595 (RJW49_09595) - 1897909..1898775 (-) 867 WP_074393401.1 helix-turn-helix domain-containing protein -
  RJW49_RS09600 (RJW49_09600) - 1899293..1899919 (+) 627 WP_074393402.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49844.31 Da        Isoelectric Point: 5.8748

>NTDB_id=880235 RJW49_RS09570 WP_074393399.1 1894263..1895630(-) (radA) [Streptococcus suis strain NLS40]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGETTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=880235 RJW49_RS09570 WP_074393399.1 1894263..1895630(-) (radA) [Streptococcus suis strain NLS40]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAGGTTGCGGAAGTCAAAAATGAGCGGGTCAGCCTGACAGGTG
AGACAACCCGACCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACTAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGCGGTGTGGTGCCGGGCAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAATCGACCCTGCT
CTTACAGGTATCGACTCAGTTGTCCACCATTGGCACCGTCCTCTACGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGATTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGATACCGTTCTTTATTTTGAGGGC
GAGCGTCAACATACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGATCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CTATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCAGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGAGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACTGTTATCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624