Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RJW49_RS08675 Genome accession   NZ_CP134477
Coordinates   1706133..1706867 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain NLS40     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701133..1711867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS08650 (RJW49_08650) rimP 1701758..1702228 (-) 471 WP_014736341.1 ribosome maturation factor RimP -
  RJW49_RS08655 (RJW49_08655) - 1702760..1703526 (+) 767 WP_094122521.1 IS630 family transposase -
  RJW49_RS08660 (RJW49_08660) trmB 1703617..1704255 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RJW49_RS08665 (RJW49_08665) ccrZ 1704252..1705046 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  RJW49_RS08670 (RJW49_08670) - 1705096..1706136 (-) 1041 WP_074393610.1 ABC transporter permease -
  RJW49_RS08675 (RJW49_08675) pptA 1706133..1706867 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  RJW49_RS08680 (RJW49_08680) - 1706930..1707343 (+) 414 WP_014736343.1 HIT family protein -
  RJW49_RS08685 (RJW49_08685) - 1707345..1707647 (+) 303 WP_014736344.1 hypothetical protein -
  RJW49_RS08690 (RJW49_08690) - 1707757..1708950 (-) 1194 WP_014736345.1 LCP family protein -
  RJW49_RS08695 (RJW49_08695) - 1708947..1709474 (-) 528 WP_024411651.1 GNAT family N-acetyltransferase -
  RJW49_RS08700 (RJW49_08700) tsaE 1709467..1709907 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RJW49_RS08705 (RJW49_08705) - 1710049..1711179 (-) 1131 Protein_1678 ISAs1 family transposase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=880230 RJW49_RS08675 WP_002942356.1 1706133..1706867(-) (pptA) [Streptococcus suis strain NLS40]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=880230 RJW49_RS08675 WP_002942356.1 1706133..1706867(-) (pptA) [Streptococcus suis strain NLS40]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGTCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCTTGGGA
GCAAGCATGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721