Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RJW49_RS01160 Genome accession   NZ_CP134477
Coordinates   213971..214684 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain NLS40     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 208971..219684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS01150 (RJW49_01150) treC 210035..211660 (-) 1626 WP_014735356.1 alpha,alpha-phosphotrehalase -
  RJW49_RS01155 (RJW49_01155) treP 211758..213737 (-) 1980 WP_142390211.1 PTS system trehalose-specific EIIBC component -
  RJW49_RS01160 (RJW49_01160) treR 213971..214684 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  RJW49_RS01165 (RJW49_01165) - 214742..215053 (+) 312 WP_014735358.1 hypothetical protein -
  RJW49_RS01170 (RJW49_01170) - 215050..215598 (+) 549 WP_002935945.1 CvpA family protein -
  RJW49_RS01175 (RJW49_01175) - 216090..218423 (+) 2334 WP_014735359.1 endonuclease MutS2 -
  RJW49_RS01180 (RJW49_01180) - 218447..219158 (+) 712 Protein_199 GNAT family N-acetyltransferase -
  RJW49_RS01185 (RJW49_01185) trxA 219370..219684 (+) 315 WP_014735360.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=880203 RJW49_RS01160 WP_012774930.1 213971..214684(+) (treR) [Streptococcus suis strain NLS40]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=880203 RJW49_RS01160 WP_012774930.1 213971..214684(+) (treR) [Streptococcus suis strain NLS40]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGTACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GCTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515