Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   RJW49_RS00550 Genome accession   NZ_CP134477
Coordinates   89081..89551 (+) Length   156 a.a.
NCBI ID   WP_014735269.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 84081..94551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS00515 (RJW49_00515) infA 84726..84944 (+) 219 WP_002936627.1 translation initiation factor IF-1 -
  RJW49_RS00520 (RJW49_00520) rpmJ 84969..85085 (+) 117 WP_001808836.1 50S ribosomal protein L36 -
  RJW49_RS00525 (RJW49_00525) rpsM 85105..85470 (+) 366 WP_002936622.1 30S ribosomal protein S13 -
  RJW49_RS00530 (RJW49_00530) rpsK 85488..85871 (+) 384 WP_004195509.1 30S ribosomal protein S11 -
  RJW49_RS00535 (RJW49_00535) - 85916..86854 (+) 939 WP_011921691.1 DNA-directed RNA polymerase subunit alpha -
  RJW49_RS00540 (RJW49_00540) rplQ 86869..87255 (+) 387 WP_000331493.1 50S ribosomal protein L17 -
  RJW49_RS00545 (RJW49_00545) - 87460..88707 (-) 1248 WP_311048061.1 ISL3 family transposase -
  RJW49_RS00550 (RJW49_00550) comX/sigX 89081..89551 (+) 471 WP_014735269.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19043.97 Da        Isoelectric Point: 9.2926

>NTDB_id=880192 RJW49_RS00550 WP_014735269.1 89081..89551(+) (comX/sigX) [Streptococcus suis strain NLS40]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYQKNLSNDQLDKYEKLISGQCFNGRRKMIRDLQIHLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=880192 RJW49_RS00550 WP_014735269.1 89081..89551(+) (comX/sigX) [Streptococcus suis strain NLS40]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAACAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTATTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTGATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCAAAAAAATCTGAGTAATGATCAACTTGATAAATATGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTAAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

98.718

100

0.987
  comX/sigX Streptococcus suis isolate S10

98.077

100

0.981
  comX/sigX Streptococcus suis P1/7

98.077

100

0.981
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

48.387

99.359

0.481
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

48.387

99.359

0.481
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.098

98.077

0.442
  comX/comX2 Streptococcus pneumoniae TIGR4

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae TIGR4

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae R6

45.033

96.795

0.436
  comX/comX2 Streptococcus pneumoniae Rx1

45.033

96.795

0.436
  comX/comX1 Streptococcus pneumoniae Rx1

45.033

96.795

0.436
  comX/comX2 Streptococcus pneumoniae D39

45.033

96.795

0.436
  comX/comX1 Streptococcus pneumoniae D39

45.033

96.795

0.436
  comX/comX1 Streptococcus pneumoniae R6

45.033

96.795

0.436
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

44.444

98.077

0.436
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

44.444

98.077

0.436
  comX/sigX Streptococcus mutans UA159

43.226

99.359

0.429
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.791

98.077

0.429
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.645

99.359

0.404
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.645

99.359

0.404
  comX Streptococcus sobrinus strain NIDR 6715-7

40.523

98.077

0.397
  comX Streptococcus thermophilus LMG 18311

40.523

98.077

0.397
  comX Streptococcus thermophilus LMD-9

40.523

98.077

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

99.359

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

99.359

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

99.359

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

99.359

0.397
  comX Streptococcus salivarius SK126

39.869

98.077

0.391
  comX/sigX Streptococcus salivarius strain HSISS4

39.869

98.077

0.391
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.217

100

0.385