Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   RJW55_RS09365 Genome accession   NZ_CP134473
Coordinates   1998514..2000304 (-) Length   596 a.a.
NCBI ID   WP_043025899.1    Uniprot ID   A0A0Z8EWB3
Organism   Streptococcus suis strain TMW_SS028     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1993514..2005304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS09340 (RJW55_09340) - 1993521..1993886 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  RJW55_RS09345 (RJW55_09345) - 1994324..1995226 (-) 903 WP_002942329.1 ABC transporter permease -
  RJW55_RS09350 (RJW55_09350) opp4B 1995240..1996196 (-) 957 WP_043025904.1 oligopeptide ABC transporter permease -
  RJW55_RS09355 (RJW55_09355) - 1996198..1997139 (-) 942 WP_043025903.1 ATP-binding cassette domain-containing protein -
  RJW55_RS09360 (RJW55_09360) - 1997142..1998140 (-) 999 WP_043025900.1 ABC transporter ATP-binding protein -
  RJW55_RS09365 (RJW55_09365) oppA 1998514..2000304 (-) 1791 WP_043025899.1 oligopeptide ABC transporter substrate-binding protein Regulator
  RJW55_RS09370 (RJW55_09370) pbp3 2000519..2001760 (+) 1242 WP_043025898.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RJW55_RS09375 (RJW55_09375) sufB 2002306..2003721 (-) 1416 WP_043025896.1 Fe-S cluster assembly protein SufB -
  RJW55_RS09380 (RJW55_09380) sufU 2004131..2004571 (-) 441 WP_043025946.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65648.40 Da        Isoelectric Point: 4.4965

>NTDB_id=880179 RJW55_RS09365 WP_043025899.1 1998514..2000304(-) (oppA) [Streptococcus suis strain TMW_SS028]
MKKTTKLFALAGITLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDRFLN
IVGMEEYVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTSKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=880179 RJW55_RS09365 WP_043025899.1 1998514..2000304(-) (oppA) [Streptococcus suis strain TMW_SS028]
ATGAAAAAGACAACAAAACTCTTTGCCTTAGCAGGTATCACACTCTTATCTGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTACAA
TCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAGATTCTTGAAC
ATTGTGGGTATGGAAGAGTATGTTGCAGGAACAGCATCAGACATCTCTGGTATTAAGAAAGTTGACGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCGCCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCTTATATCCAACCAGAACATATCT
ATAAAGATATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACATCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACGGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACAGCC
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8EWB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

93.624

100

0.936