Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RJW55_RS09305 Genome accession   NZ_CP134473
Coordinates   1987692..1988426 (-) Length   244 a.a.
NCBI ID   WP_043025751.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1982692..1993426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS09275 (RJW55_09275) rnpM 1982907..1983203 (-) 297 WP_043025744.1 RNase P modulator RnpM -
  RJW55_RS09280 (RJW55_09280) nusA 1983220..1984374 (-) 1155 WP_043025746.1 transcription termination factor NusA -
  RJW55_RS09285 (RJW55_09285) rimP 1984448..1984918 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  RJW55_RS09290 (RJW55_09290) trmB 1985176..1985814 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RJW55_RS09295 (RJW55_09295) ccrZ 1985811..1986605 (-) 795 WP_043025748.1 cell cycle regulator CcrZ -
  RJW55_RS09300 (RJW55_09300) - 1986655..1987695 (-) 1041 WP_043025750.1 ABC transporter permease -
  RJW55_RS09305 (RJW55_09305) pptA 1987692..1988426 (-) 735 WP_043025751.1 ABC transporter ATP-binding protein Regulator
  RJW55_RS09310 (RJW55_09310) - 1988489..1988902 (+) 414 WP_043025752.1 HIT family protein -
  RJW55_RS09315 (RJW55_09315) - 1988904..1989233 (+) 330 WP_002942350.1 hypothetical protein -
  RJW55_RS09320 (RJW55_09320) - 1989601..1990794 (-) 1194 WP_024377877.1 LCP family protein -
  RJW55_RS09325 (RJW55_09325) - 1990791..1991318 (-) 528 WP_043025753.1 GNAT family N-acetyltransferase -
  RJW55_RS09330 (RJW55_09330) tsaE 1991311..1991751 (-) 441 WP_029177428.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26854.24 Da        Isoelectric Point: 4.4201

>NTDB_id=880178 RJW55_RS09305 WP_043025751.1 1987692..1988426(-) (pptA) [Streptococcus suis strain TMW_SS028]
MLEVKNVTGGYVNIPVLKDVSFTVEDGKLVGLIGLNGAGKSTTIKEIIGLLPPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQIAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=880178 RJW55_RS09305 WP_043025751.1 1987692..1988426(-) (pptA) [Streptococcus suis strain TMW_SS028]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TAAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGCCCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGTACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAATCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717