Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   RJW55_RS02800 Genome accession   NZ_CP134473
Coordinates   582159..583934 (+) Length   591 a.a.
NCBI ID   WP_172073074.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 577159..588934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS02765 (RJW55_02765) - 577594..578121 (+) 528 WP_043027017.1 metallophosphoesterase -
  RJW55_RS02770 (RJW55_02770) cbpB 578118..578576 (+) 459 WP_043027018.1 cyclic-di-AMP-binding protein CbpB -
  RJW55_RS02775 (RJW55_02775) xerD 578573..579304 (+) 732 WP_043027019.1 site-specific tyrosine recombinase XerD -
  RJW55_RS02780 (RJW55_02780) - 579304..580023 (+) 720 WP_043027020.1 segregation/condensation protein A -
  RJW55_RS02785 (RJW55_02785) scpB 580007..580576 (+) 570 WP_024412995.1 SMC-Scp complex subunit ScpB -
  RJW55_RS02790 (RJW55_02790) - 580566..581297 (+) 732 WP_024375836.1 pseudouridine synthase -
  RJW55_RS02795 (RJW55_02795) yidD 581297..581536 (+) 240 WP_043027021.1 membrane protein insertion efficiency factor YidD -
  RJW55_RS02800 (RJW55_02800) oppA 582159..583934 (+) 1776 WP_172073074.1 oligopeptide ABC transporter substrate-binding protein Regulator
  RJW55_RS02805 (RJW55_02805) - 584083..584262 (+) 180 WP_125177168.1 hypothetical protein -
  RJW55_RS02810 (RJW55_02810) - 584311..584856 (+) 546 WP_043027024.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  RJW55_RS02815 (RJW55_02815) - 585302..585859 (+) 558 WP_024417723.1 ECF transporter S component -
  RJW55_RS02820 (RJW55_02820) - 585884..586537 (+) 654 WP_043027025.1 phosphatase PAP2 family protein -
  RJW55_RS02825 (RJW55_02825) - 586923..588722 (-) 1800 WP_043027013.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65449.14 Da        Isoelectric Point: 4.2948

>NTDB_id=880155 RJW55_RS02800 WP_172073074.1 582159..583934(+) (oppA) [Streptococcus suis strain TMW_SS028]
MKRMKNIALTGIGLLSIATLTACQTKERTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVRKVDDYTVVLSVKDVSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLD
EAGYKDVDGDGMREDADGKSLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKLSHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=880155 RJW55_RS02800 WP_172073074.1 582159..583934(+) (oppA) [Streptococcus suis strain TMW_SS028]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGCCAAACTAAAGA
AAGGACGAGTGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGGACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAGGAAGGTTGATGATTATACGGTAGTCCTCTC
AGTGAAAGACGTGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTATTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGATC
AGTACGAATCTTACAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAATGGATTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGCTATAATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAATCGCTTACTATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAG
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATTAAGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.488

100

0.658