Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RIU93_RS07975 Genome accession   NZ_CP134464
Coordinates   1606851..1607567 (+) Length   238 a.a.
NCBI ID   WP_002466277.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 2023.05     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601851..1612567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS07940 (RIU93_07940) - 1602335..1602961 (+) 627 WP_058709858.1 nitroreductase family protein -
  RIU93_RS07945 (RIU93_07945) - 1603078..1603863 (+) 786 WP_058709857.1 carbon-nitrogen family hydrolase -
  RIU93_RS07950 (RIU93_07950) - 1604277..1604354 (-) 78 WP_015364841.1 delta-lysin family phenol-soluble modulin -
  RIU93_RS07955 (RIU93_07955) - 1604421..1604498 (-) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  RIU93_RS07960 (RIU93_07960) - 1604815..1605378 (+) 564 WP_058709856.1 accessory gene regulator AgrB -
  RIU93_RS07965 (RIU93_07965) agrD 1605383..1605523 (+) 141 WP_058709855.1 cyclic lactone autoinducer peptide AgrD -
  RIU93_RS07970 (RIU93_07970) agrC 1605549..1606838 (+) 1290 WP_058709854.1 quorum-sensing sensor histidine kinase AgrC -
  RIU93_RS07975 (RIU93_07975) agrA 1606851..1607567 (+) 717 WP_002466277.1 quorum-sensing response regulator AgrA Regulator
  RIU93_RS07980 (RIU93_07980) - 1607626..1608582 (-) 957 WP_058709853.1 carbohydrate kinase -
  RIU93_RS07985 (RIU93_07985) - 1608579..1610063 (-) 1485 WP_002466269.1 sucrose-6-phosphate hydrolase -
  RIU93_RS07990 (RIU93_07990) - 1610364..1611314 (-) 951 WP_311095200.1 LacI family DNA-binding transcriptional regulator -
  RIU93_RS07995 (RIU93_07995) - 1611455..1611679 (-) 225 WP_002466256.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27897.92 Da        Isoelectric Point: 5.9175

>NTDB_id=880072 RIU93_RS07975 WP_002466277.1 1606851..1607567(+) (agrA) [Staphylococcus warneri strain 2023.05]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=880072 RIU93_RS07975 WP_002466277.1 1606851..1607567(+) (agrA) [Staphylococcus warneri strain 2023.05]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCTTCAATTATTAAAAATTATATTATGATTGA
GGAAAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAATGACATCG
GTTGTTATTTCTTAGATATTCAACTTGAAGCTGATATAAATGGTATTAAATTAGGTAGTGAAATTCGAAAACATGATCCT
GTAGGTAATATCATTTTTGTAACAAGTCATAGTGAATTAACGTATCTCACTTTTGTTTATAAAGTGGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTTAAATTAT
TATCTAAAGAAAGTAATGTAGAAACAATAGAGTTAAAGCGTGGTAGTAATTCAGTTTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGTAAATCACATCGATTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAACCTTAA
AGAATTAAGTCAATTAGATGACCGCTTCTTTAGATGTCATAATAGCTTTGTGATTAACCGAAGAAATATTGAGTCAATCG
ATTCTAAAGAACGCATTGTCTATTTTAAAAATAAAGAGCATTGTTATGCATCAGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937