Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RIU93_RS01180 Genome accession   NZ_CP134464
Coordinates   236460..237824 (+) Length   454 a.a.
NCBI ID   WP_002465557.1    Uniprot ID   A0A364UNL0
Organism   Staphylococcus warneri strain 2023.05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231460..242824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS01160 (RIU93_01160) - 231613..232074 (+) 462 WP_058710110.1 CtsR family transcriptional regulator -
  RIU93_RS01165 (RIU93_01165) - 232095..232652 (+) 558 WP_049415263.1 UvrB/UvrC motif-containing protein -
  RIU93_RS01170 (RIU93_01170) - 232645..233649 (+) 1005 WP_002465569.1 protein arginine kinase -
  RIU93_RS01175 (RIU93_01175) - 233665..236118 (+) 2454 WP_002465575.1 ATP-dependent Clp protease ATP-binding subunit -
  RIU93_RS01180 (RIU93_01180) radA 236460..237824 (+) 1365 WP_002465557.1 DNA repair protein RadA Machinery gene
  RIU93_RS01185 (RIU93_01185) - 237851..238924 (+) 1074 WP_049415268.1 PIN/TRAM domain-containing protein -
  RIU93_RS01190 (RIU93_01190) gltX 239210..240664 (+) 1455 WP_002465549.1 glutamate--tRNA ligase -
  RIU93_RS01195 (RIU93_01195) cysE 241059..241688 (+) 630 WP_171001928.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49837.32 Da        Isoelectric Point: 6.8989

>NTDB_id=880050 RIU93_RS01180 WP_002465557.1 236460..237824(+) (radA) [Staphylococcus warneri strain 2023.05]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKETAGKVQTLDSIKNESTPRVLTESKEFNRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESINQTKLRADRLEEDSSKLQVLAETDLEVIYQTVK
DINPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVR
RVARIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEDIKVVGVSSVHEALKYAFNS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=880050 RIU93_RS01180 WP_002465557.1 236460..237824(+) (radA) [Staphylococcus warneri strain 2023.05]
TTGGCCAAGAAAAAGATAATATTTGAATGTATGGCATGTGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGTGCATGGAACCAGATGGAAGAAATAGTAGAAAAAGCTGCCAATCCTAAACATGGTGTTAAATCTAAAGAAACAGCAG
GGAAAGTACAAACTTTAGATAGTATCAAAAATGAATCTACACCACGCGTTCTTACAGAATCTAAAGAATTTAACCGTGTA
CTAGGGGGAGGAATAGTTAATGGATCATTAGTATTAATAGGCGGAGATCCAGGTATTGGTAAATCCACGTTACTACTACA
AATTTGTGCCTCACTCTCACAATCTAAAAATGTTCTATATATCACAGGTGAGGAATCAATCAATCAAACAAAATTACGTG
CAGATCGTTTGGAAGAAGACTCGAGTAAATTACAAGTATTAGCTGAAACGGATTTAGAAGTCATTTATCAAACAGTTAAA
GACATTAATCCGGATTTACTAGTAGTTGACTCTATTCAAACAATATACCATCCAGAAATTAGCTCTGCACCAGGATCTGT
GTCACAGGTTAGAGAAAGTACGCAAAGCTTAATGAATATAGCTAAACAAATGAACATAGCTACATTTATTGTTGGGCATG
TTACAAAAGAAGGACAAATTGCAGGACCTAGATTACTTGAACACATGGTGGATACTGTATTGTATTTTGAAGGTGATGAG
CATCATGCTTATCGAATACTACGAGCAGTTAAAAACCGTTTTGGTTCGACTAATGAGATGGGAATATTTGAAATGAAACA
AAGTGGTCTAAAAGGTGTGCTAAATCCTTCAGAGATGTTTTTAGAAGAACGTTCAACTAATGTGCCAGGTTCAACAATTG
TTTCAACTATGGAAGGTACAAGACCACTACTTATTGAAGTACAGGCGCTTGTAACACCGACAACATTTAATAATCCGCGT
CGTATGGCTACCGGTATCGATCACAATCGTTTAAGCTTATTAATGGCTGTTTTAGAGAAAAAAGAAAATTATCTATTACA
ACAACAAGATGCTTATATTAAGGTTGCTGGCGGCGTGAAATTAACTGAACCTGCAGTTGATTTAAGTATCATTGTAGCTA
CAGCTTCAAGCTTTAAAGACAAAGCTGTAGACGGCTTAGACTGCTTTATTGGTGAGGTTGGTCTAACAGGAGAAGTAAGA
CGTGTAGCTAGAATAGAACAACGTGTTCAAGAAGCAGCAAAGTTAGGATTTAAGAGAGTTATTATTCCTCAAACTAATAT
AGGTGGTTGGACCTTCCCGGAAGATATAAAAGTAGTAGGTGTTTCATCAGTACATGAAGCATTAAAATACGCATTTAATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(69-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A364UNL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.105

100

0.674
  radA Streptococcus pneumoniae Rx1

60.398

99.559

0.601
  radA Streptococcus pneumoniae D39

60.398

99.559

0.601
  radA Streptococcus pneumoniae R6

60.398

99.559

0.601
  radA Streptococcus pneumoniae TIGR4

60.398

99.559

0.601
  radA Streptococcus mitis NCTC 12261

60.398

99.559

0.601
  radA Streptococcus mitis SK321

60.398

99.559

0.601