Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RJT46_RS22470 Genome accession   NZ_CP134463
Coordinates   4624052..4625425 (-) Length   457 a.a.
NCBI ID   WP_013312184.1    Uniprot ID   A0A0M1Q9A3
Organism   Paenibacillus polymyxa strain B8-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4619052..4630425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT46_RS22445 ispF 4619641..4620117 (-) 477 WP_274482863.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RJT46_RS22450 ispD 4620114..4620812 (-) 699 WP_250240507.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RJT46_RS22455 - 4620883..4621968 (-) 1086 WP_311080189.1 PIN/TRAM domain-containing protein -
  RJT46_RS22460 pssA 4622162..4622908 (-) 747 WP_311080191.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  RJT46_RS22465 disA 4622963..4624039 (-) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  RJT46_RS22470 radA 4624052..4625425 (-) 1374 WP_013312184.1 DNA repair protein RadA Machinery gene
  RJT46_RS22475 clpC 4625666..4628110 (-) 2445 WP_013312185.1 ATP-dependent protease ATP-binding subunit ClpC -
  RJT46_RS22480 - 4628155..4629219 (-) 1065 WP_311080197.1 protein arginine kinase -
  RJT46_RS22485 - 4629248..4629772 (-) 525 WP_311080199.1 UvrB/UvrC motif-containing protein -
  RJT46_RS22490 - 4629842..4630306 (-) 465 WP_274482868.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49244.92 Da        Isoelectric Point: 6.7620

>NTDB_id=880041 RJT46_RS22470 WP_013312184.1 4624052..4625425(-) (radA) [Paenibacillus polymyxa strain B8-12]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=880041 RJT46_RS22470 WP_013312184.1 4624052..4625425(-) (radA) [Paenibacillus polymyxa strain B8-12]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTCCCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTGCCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
CATGCTGCAAACATCTAATGAACTGGCTTTAACTGGTTTAAAGGTGTTGTACGTGTCTGGCGAGGAATCTGTCCGTCAAA
CGAAACTCCGTGCAGATCGGCTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACTAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGCAGTGTGGCTCAGGTGCGGGAGTGTACTTCACGCTTTATGAGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCGCGTTTGTTGGAACATATGGTTGATTGTGTACTTTATTTT
GAAGGAGAGCGTCACCATACGTATCGGCTTTTGCGTGCAGTTAAAAATCGTTTTGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTGTCGAATCCTTCTGAACTATTCCTGTCTGAACGACCACTGGGGGTGGCAG
GTTCTACTGTTGTAGCCAGTATGGAAGGAACCCGACCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACACATTTT
CCATCTCCACGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTAGCCGGAGGCGTGAAGTTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACAAAGCCGTATGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTGCGCGCGGTATCCCGAGCAGAACAGCGAGTACGAGAAGCGGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGTTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q9A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58