Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RJT46_RS21550 Genome accession   NZ_CP134463
Coordinates   4418767..4419720 (-) Length   317 a.a.
NCBI ID   WP_025721924.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain B8-12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4413767..4424720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT46_RS21525 - 4414237..4415148 (-) 912 WP_311080006.1 aldo/keto reductase -
  RJT46_RS21530 - 4415305..4416048 (-) 744 WP_311080007.1 alpha/beta hydrolase-fold protein -
  RJT46_RS21535 - 4416082..4417062 (-) 981 WP_311080009.1 siderophore ABC transporter substrate-binding protein -
  RJT46_RS21540 - 4417075..4417833 (-) 759 WP_311080011.1 ABC transporter ATP-binding protein -
  RJT46_RS21545 - 4417827..4418777 (-) 951 WP_013312013.1 iron chelate uptake ABC transporter family permease subunit -
  RJT46_RS21550 ceuB 4418767..4419720 (-) 954 WP_025721924.1 ABC transporter permease Machinery gene
  RJT46_RS21555 - 4420050..4420727 (+) 678 WP_311083632.1 response regulator transcription factor -
  RJT46_RS21560 - 4420724..4421641 (+) 918 WP_311080013.1 HAMP domain-containing sensor histidine kinase -
  RJT46_RS21565 - 4421750..4422427 (+) 678 WP_311080015.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=880040 RJT46_RS21550 WP_025721924.1 4418767..4419720(-) (ceuB) [Paenibacillus polymyxa strain B8-12]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=880040 RJT46_RS21550 WP_025721924.1 4418767..4419720(-) (ceuB) [Paenibacillus polymyxa strain B8-12]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGTT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTGT
TTATCCCACTTGTCGGTTTGATGTTTGGGGGCATTTTAAATTCGGTAACGACTTTTTTTGCCTACAAATATAATCTGATT
CAGGGCATTTCTTCGTGGATGCAAGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
CTTGGTTGCGCTGGCGTACATATATGCAAATCGTTTCACAATTGCAGGCATGGGCGAGGATTTTGCGGCGAATTTGGGAG
TTCATTACAAGCGCACCGTCAATGTCGGGTTAGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCTAATCTCGTCAGTATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508