Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RKE57_RS16055 Genome accession   NZ_CP134450
Coordinates   3475503..3475904 (-) Length   133 a.a.
NCBI ID   WP_005418455.1    Uniprot ID   -
Organism   Stenotrophomonas geniculata strain BR23     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470503..3480904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE57_RS16040 (RKE57_16040) - 3472515..3474551 (-) 2037 WP_010482706.1 methyl-accepting chemotaxis protein -
  RKE57_RS16045 (RKE57_16045) - 3474593..3475123 (-) 531 WP_010482705.1 chemotaxis protein CheW -
  RKE57_RS16050 (RKE57_16050) - 3475123..3475485 (-) 363 WP_005410717.1 response regulator -
  RKE57_RS16055 (RKE57_16055) pilG 3475503..3475904 (-) 402 WP_005418455.1 twitching motility response regulator PilG Regulator
  RKE57_RS16060 (RKE57_16060) gshB 3476146..3477093 (+) 948 WP_260363507.1 glutathione synthase -
  RKE57_RS16065 (RKE57_16065) - 3477093..3477977 (+) 885 WP_010482701.1 energy transducer TonB -
  RKE57_RS16070 (RKE57_16070) tsaB 3478544..3479257 (-) 714 WP_311068679.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14657.98 Da        Isoelectric Point: 6.3483

>NTDB_id=880010 RKE57_RS16055 WP_005418455.1 3475503..3475904(-) (pilG) [Stenotrophomonas geniculata strain BR23]
MTENTTAGGELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKATPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLGAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=880010 RKE57_RS16055 WP_005418455.1 3475503..3475904(-) (pilG) [Stenotrophomonas geniculata strain BR23]
ATGACTGAAAACACGACTGCGGGCGGGGAACTCGCAGGACTCCGGGTGATGGTCATCGATGATTCGAAGACCATCCGCAG
GACTGCGGAAACGCTGCTCAAGCGCGAAGGCTGCGAGGTGGTCACCGCCACCGACGGCTTCGAAGCGCTTGCGAAGATCG
CAGACCAGCAACCGCAGATCATCTTCGTCGACATCATGATGCCGCGCCTGGACGGGTACCAGACCTGTGCGCTGATCAAG
GGCAACCAGCTGTTCAAGGCGACCCCGGTCATCATGCTCTCGTCCAAGGATGGCCTGTTCGACAAGGCGCGGGGACGCAT
CGTCGGCTCGGAGCAATACCTGACGAAGCCTTTCACGCGTGAAGAACTGCTGGGTGCCATCCGCACATACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677