Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RKE53_RS18005 Genome accession   NZ_CP134413
Coordinates   3887365..3889005 (+) Length   546 a.a.
NCBI ID   WP_104397849.1    Uniprot ID   -
Organism   Microcystis aeruginosa NRERC-214     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3882365..3894005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE53_RS17995 (RKE53_17995) - 3885193..3886100 (+) 908 Protein_3571 IS5 family transposase -
  RKE53_RS18000 (RKE53_18000) - 3886493..3887335 (+) 843 WP_311130891.1 IS5 family transposase -
  RKE53_RS18005 (RKE53_18005) comA 3887365..3889005 (+) 1641 WP_104397849.1 DUF655 domain-containing protein Machinery gene
  RKE53_RS18010 (RKE53_18010) - 3889047..3889358 (-) 312 WP_002797828.1 MgPME-cyclase complex family protein -
  RKE53_RS18015 (RKE53_18015) - 3889426..3890148 (-) 723 WP_311130941.1 pyridoxine 5'-phosphate synthase -
  RKE53_RS18020 (RKE53_18020) - 3890208..3890552 (-) 345 WP_002733791.1 YbaB/EbfC family nucleoid-associated protein -
  RKE53_RS18025 (RKE53_18025) - 3890816..3892012 (+) 1197 WP_311130942.1 DUF4377 domain-containing protein -
  RKE53_RS18030 (RKE53_18030) - 3892262..3893083 (-) 822 WP_311130943.1 hypothetical protein -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 61656.40 Da        Isoelectric Point: 9.9024

>NTDB_id=879995 RKE53_RS18005 WP_104397849.1 3887365..3889005(+) (comA) [Microcystis aeruginosa NRERC-214]
MWTKMAIDKLRLKKIQPMKQLRFLLGTVFLLGGCHSLNAIQNRPQPLPQDQYIQVYFNYNQAQGSNYTDPYRQINRPGDN
LEQVIIDNINSAKSSIDLAVQELRLPAIAQALVARQQQGIKVRVILENIYNKPIHSLAKNQEKSSDREQERYQNLVDLVD
INRDGKLSTEEIAQRDAITILKKAGIPLIDDSADRSKGSGLMHHKFMVIDNHTTLISSANYTLSDIHGDFSNPKTVGNAN
HLLVITNPPLARVFQKEFNLMWGREDRPRFGLDKPQRKPQTITIGNSSLTVKFSPDSTAYPWAITSNGLIGETLNKAKKS
VDLALFVFTEQPLANILAQRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPDLARGD
KLHHKFGLIDDKIVITGSHNWSRAANHQNDEALVIINNPTVAAHFDREFQYLYRTAKLGLPETIKNRIERDRKNCPQSVT
IKSDRLINLNTATKEELDSLPGISGKLAEKIIDARQQKPFTSLEDLDRVSGIGRGKINKLKGKVNW

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=879995 RKE53_RS18005 WP_104397849.1 3887365..3889005(+) (comA) [Microcystis aeruginosa NRERC-214]
ATGTGGACAAAAATGGCAATAGATAAATTGAGATTAAAAAAAATTCAGCCCATGAAACAGTTAAGATTTTTATTAGGGAC
AGTTTTTCTTTTGGGTGGCTGTCATTCTTTGAATGCTATCCAAAATCGTCCGCAACCCTTGCCCCAAGATCAATATATTC
AAGTCTATTTTAATTATAATCAGGCCCAGGGGTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCCGGGGGATAAT
TTAGAACAGGTTATTATTGATAATATCAACTCGGCCAAAAGTTCGATCGATCTAGCAGTGCAAGAGTTACGTTTACCCGC
CATTGCTCAAGCTTTAGTTGCTCGTCAGCAGCAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATAAACCTA
TTCATAGTTTAGCCAAAAACCAAGAAAAATCAAGCGATCGAGAACAGGAACGTTATCAAAACCTTGTTGATTTAGTTGAT
ATAAATCGAGATGGTAAATTAAGTACAGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGCATTCC
CCTAATTGATGATAGTGCAGATCGCTCAAAAGGTAGCGGTTTAATGCACCATAAATTCATGGTTATTGATAATCACACTA
CTTTAATCAGTTCGGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATCCCAAAACTGTCGGGAATGCCAAT
CACTTATTAGTAATTACTAATCCCCCACTAGCTAGAGTTTTTCAAAAAGAATTTAATCTGATGTGGGGAAGGGAAGATCG
TCCTAGATTTGGGTTAGATAAACCCCAGAGAAAACCACAAACAATTACTATCGGTAATAGTAGTCTAACGGTCAAATTTT
CCCCCGATTCTACCGCTTATCCCTGGGCAATTACTAGCAATGGTCTGATCGGTGAAACTTTAAATAAAGCTAAAAAATCC
GTGGATTTAGCCCTGTTTGTCTTTACGGAACAGCCTTTAGCGAATATTCTCGCCCAACGACATCAAAAAGGGATAGAAAT
TAAAGCTTTAATTGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATA
AATGTCGTTATGAACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCGATCTAGCCCGGGGAGAT
AAATTACACCATAAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAGAGCCGCTAACCA
TCAAAACGATGAAGCTTTAGTTATTATCAATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTTTACC
GTACCGCTAAATTAGGACTGCCGGAAACTATTAAAAATCGGATCGAACGGGATAGAAAAAACTGCCCCCAATCTGTAACA
ATTAAAAGCGATCGCTTAATTAATTTAAACACCGCCACCAAAGAAGAATTAGATAGTTTACCCGGTATCAGTGGCAAATT
AGCCGAAAAAATTATCGATGCCAGGCAACAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTC
GGGGAAAAATCAACAAGCTCAAAGGCAAAGTCAACTGGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(85-262)

PLD-like domain (PLDc_2)

(312-452)

Helix-hairpin-helix motif (HHH_3)

(485-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

52.533

97.619

0.513