Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   RJ558_RS07300 Genome accession   NZ_CP134397
Coordinates   1517144..1518457 (-) Length   437 a.a.
NCBI ID   WP_310957521.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003s     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512144..1523457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ558_RS07270 (RJ558_07270) nadC 1512609..1513430 (-) 822 WP_310957515.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RJ558_RS07275 (RJ558_07275) nadA 1513430..1514440 (-) 1011 WP_310957517.1 quinolinate synthase NadA -
  RJ558_RS07280 (RJ558_07280) - 1514430..1515233 (-) 804 WP_310957518.1 phosphatidylserine decarboxylase -
  RJ558_RS07285 (RJ558_07285) - 1515227..1515733 (-) 507 WP_310957519.1 DUF6115 domain-containing protein -
  RJ558_RS07290 (RJ558_07290) - 1515746..1516240 (-) 495 WP_180663760.1 hypothetical protein -
  RJ558_RS07295 (RJ558_07295) mqnP 1516233..1517117 (-) 885 WP_310957520.1 menaquinone biosynthesis prenyltransferase MqnP -
  RJ558_RS07300 (RJ558_07300) comEC/comE3 1517144..1518457 (-) 1314 WP_310957521.1 ComEC/Rec2 family competence protein Machinery gene
  RJ558_RS07305 (RJ558_07305) - 1518454..1519914 (-) 1461 WP_310957522.1 replicative DNA helicase -
  RJ558_RS07310 (RJ558_07310) - 1519925..1521319 (-) 1395 WP_310957523.1 NAD(P)H-hydrate dehydratase -
  RJ558_RS07315 (RJ558_07315) crdS 1521322..1522524 (-) 1203 WP_310958118.1 copper-sensing histidine kinase CrdS -
  RJ558_RS07320 (RJ558_07320) crdR 1522490..1523131 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50159.14 Da        Isoelectric Point: 9.8315

>NTDB_id=879959 RJ558_RS07300 WP_310957521.1 1517144..1518457(-) (comEC/comE3) [Helicobacter pylori strain ICDC15003s]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISVPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=879959 RJ558_RS07300 WP_310957521.1 1517144..1518457(-) (comEC/comE3) [Helicobacter pylori strain ICDC15003s]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACCTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTGGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCAAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTACTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATTATCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961