Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OCX48_RS08095 Genome accession   NZ_AP024736
Coordinates   1656478..1656924 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59709     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1651478..1661924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX48_RS08065 gcvPA 1652404..1653750 (-) 1347 WP_117200971.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OCX48_RS08070 gcvT 1653770..1654861 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OCX48_RS08075 - 1655020..1655544 (-) 525 WP_001015121.1 shikimate kinase -
  OCX48_RS08080 - 1655534..1655680 (-) 147 WP_001789879.1 hypothetical protein -
  OCX48_RS08085 comGF 1655777..1656274 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  OCX48_RS08090 comGE 1656192..1656491 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OCX48_RS08095 comGD 1656478..1656924 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OCX48_RS08100 comGC 1656902..1657213 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OCX48_RS08105 comGB 1657227..1658297 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  OCX48_RS08110 comGA 1658269..1659243 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OCX48_RS08115 - 1659295..1659918 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  OCX48_RS08120 - 1659915..1660244 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OCX48_RS08125 - 1660244..1661230 (-) 987 WP_000161314.1 ROK family glucokinase -
  OCX48_RS08130 - 1661227..1661430 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=87992 OCX48_RS08095 WP_001788899.1 1656478..1656924(-) (comGD) [Staphylococcus aureus strain 59709]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=87992 OCX48_RS08095 WP_001788899.1 1656478..1656924(-) (comGD) [Staphylococcus aureus strain 59709]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment