Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   RJ559_RS00010 Genome accession   NZ_CP134395
Coordinates   1598..3031 (+) Length   477 a.a.
NCBI ID   WP_310957582.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003-8-2     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ559_RS00005 (RJ559_00005) dnaA 1..1365 (+) 1365 WP_310957580.1 chromosomal replication initiator protein DnaA -
  RJ559_RS00010 (RJ559_00010) comH 1598..3031 (+) 1434 WP_310957582.1 competence protein Machinery gene
  RJ559_RS00020 (RJ559_00020) - 3212..3964 (+) 753 WP_000767589.1 exodeoxyribonuclease III -
  RJ559_RS00025 (RJ559_00025) - 3961..4596 (-) 636 WP_310957584.1 outer membrane protein -
  RJ559_RS00030 (RJ559_00030) - 4600..4953 (-) 354 WP_000836998.1 hypothetical protein -
  RJ559_RS00035 (RJ559_00035) recG 5035..6900 (+) 1866 WP_310957585.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54579.47 Da        Isoelectric Point: 6.8239

>NTDB_id=879901 RJ559_RS00010 WP_310957582.1 1598..3031(+) (comH) [Helicobacter pylori strain ICDC15003-8-2]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHSHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
ATPSKTSSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNNADISENNESNENKDNVEKQAIRDPNIKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=879901 RJ559_RS00010 WP_310957582.1 1598..3031(+) (comH) [Helicobacter pylori strain ICDC15003-8-2]
ATGAAAAAAACCCTTTGTCTTTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACACTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACTCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAACCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAGCAAAACAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACAACGCTGATATTAGTGAAA
ACAATGAAAGCAATGAGAATAAGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAATCTCCG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAGAACAATTTTACGATTCTTCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCTAAACAAGACGATCAAATAG
AGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATTAAAGAGAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.825

100

0.962