Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WOC62_RS13090 Genome accession   NZ_CP150773
Coordinates   2612828..2613568 (+) Length   246 a.a.
NCBI ID   WP_000216873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20913     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607828..2618568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC62_RS13065 (WOC62_13060) yhaM 2608246..2609187 (+) 942 WP_001244179.1 3'-5' exoribonuclease YhaM -
  WOC62_RS13070 (WOC62_13065) - 2609308..2610270 (-) 963 WP_000782121.1 foldase protein PrsA -
  WOC62_RS13075 (WOC62_13070) - 2610475..2611032 (-) 558 WP_117218910.1 DUF3267 domain-containing protein -
  WOC62_RS13080 (WOC62_13075) - 2611765..2612130 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  WOC62_RS13085 (WOC62_13080) - 2612272..2612694 (-) 423 WP_000004981.1 HIT family protein -
  WOC62_RS13090 (WOC62_13085) pptA 2612828..2613568 (+) 741 WP_000216873.1 ABC transporter ATP-binding protein EcsA Regulator
  WOC62_RS13095 (WOC62_13090) ecsB 2613561..2614784 (+) 1224 WP_000551840.1 ABC transporter permease EcsB -
  WOC62_RS13100 (WOC62_13095) traP 2614908..2615411 (-) 504 WP_000737978.1 signal transduction protein TRAP -
  WOC62_RS13105 (WOC62_13100) - 2615574..2615684 (+) 111 WP_001790154.1 hypothetical protein -
  WOC62_RS13110 (WOC62_13105) hemE 2615674..2616711 (+) 1038 WP_341264502.1 uroporphyrinogen decarboxylase -
  WOC62_RS13115 (WOC62_13110) hemH 2616769..2617692 (+) 924 WP_000162881.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27701.09 Da        Isoelectric Point: 4.7455

>NTDB_id=879678 WOC62_RS13090 WP_000216873.1 2612828..2613568(+) (pptA) [Staphylococcus aureus strain TUM20913]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHKQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=879678 WOC62_RS13090 WP_000216873.1 2612828..2613568(+) (pptA) [Staphylococcus aureus strain TUM20913]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAAACAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545