Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RJD40_RS12910 Genome accession   NZ_CP134280
Coordinates   2860356..2860874 (-) Length   172 a.a.
NCBI ID   WP_005593998.1    Uniprot ID   A3F9H8
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2855356..2865874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS12880 (RJD40_12880) - 2855402..2856733 (-) 1332 WP_418113549.1 PTS sugar transporter subunit IIC -
  RJD40_RS12885 (RJD40_12885) - 2856834..2857139 (-) 306 WP_005594004.1 PTS sugar transporter subunit IIB -
  RJD40_RS12890 (RJD40_12890) - 2857694..2858350 (+) 657 WP_065545009.1 inorganic diphosphatase -
  RJD40_RS12895 (RJD40_12895) - 2858480..2859397 (-) 918 WP_418113550.1 DMT family transporter -
  RJD40_RS12905 (RJD40_12905) - 2859787..2860263 (+) 477 WP_005593999.1 RDD family protein -
  RJD40_RS12910 (RJD40_12910) luxS 2860356..2860874 (-) 519 WP_005593998.1 S-ribosylhomocysteine lyase Regulator
  RJD40_RS12915 (RJD40_12915) - 2860892..2861503 (-) 612 WP_005593997.1 hypothetical protein -
  RJD40_RS12920 (RJD40_12920) gshA 2861520..2863085 (-) 1566 WP_005593996.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18825.56 Da        Isoelectric Point: 4.7999

>NTDB_id=879647 RJD40_RS12910 WP_005593998.1 2860356..2860874(-) (luxS) [Vibrio scophthalmi strain 21FBVib0106]
MPLLDSFTVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPSEQQVATAWLAAMADVLTVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIAAGISVNKNDDLA
LPAEMLNELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=879647 RJD40_RS12910 WP_005593998.1 2860356..2860874(-) (luxS) [Vibrio scophthalmi strain 21FBVib0106]
ATGCCACTACTAGATAGCTTTACTGTCGATCATACCCGCATGCATGCACCGGCTGTGCGTGTTGCGAAAACCATGACAAC
GCCAAAAGGCGACACCATTACTGTGTTTGATTTGCGTTTTACTGCGCCAAACAAAGACATCTTGTCAGAGAAAGGTATTC
ACACCTTAGAGCACCTATACGCCGGCTTTATGCGTAATCACCTTAATGGTGATGCGGTAGAAATTATTGATATTTCGCCA
ATGGGGTGTCGTACGGGTTTTTACATGAGCTTGATTGGTACGCCGAGTGAACAACAAGTTGCGACGGCATGGCTTGCTGC
AATGGCTGACGTGTTGACGGTTGAAAGTCAGAACAAAATCCCTGAGCTGAATGAATACCAGTGCGGTACTGCAGCGATGC
ACTCACTAGAAGAAGCGAAACAGATTGCGCAAGCAATTATCGCCGCGGGCATTTCAGTGAATAAGAATGACGATCTTGCT
CTACCGGCTGAAATGCTCAATGAGCTTCGCGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3F9H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866