Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RJD40_RS07885 Genome accession   NZ_CP134280
Coordinates   1739193..1740617 (+) Length   474 a.a.
NCBI ID   WP_005597561.1    Uniprot ID   F9RRT6
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1734193..1745617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS07865 (RJD40_07865) - 1734797..1736347 (+) 1551 WP_418113139.1 MFS transporter -
  RJD40_RS07870 (RJD40_07870) - 1736411..1737013 (-) 603 WP_005597555.1 TetR/AcrR family transcriptional regulator -
  RJD40_RS07875 (RJD40_07875) - 1737210..1738286 (-) 1077 WP_418113140.1 serine hydrolase domain-containing protein -
  RJD40_RS07880 (RJD40_07880) - 1738596..1738973 (+) 378 WP_005597559.1 RidA family protein -
  RJD40_RS07885 (RJD40_07885) sbcB 1739193..1740617 (+) 1425 WP_005597561.1 exodeoxyribonuclease I Machinery gene
  RJD40_RS07890 (RJD40_07890) - 1740661..1741026 (+) 366 WP_005597563.1 CidA/LrgA family protein -
  RJD40_RS07895 (RJD40_07895) - 1741026..1741703 (+) 678 WP_005597565.1 CidB/LrgB family autolysis modulator -
  RJD40_RS07900 (RJD40_07900) cdd 1741891..1742778 (+) 888 WP_005597567.1 cytidine deaminase -
  RJD40_RS07905 (RJD40_07905) - 1742885..1744096 (-) 1212 WP_418113141.1 HD-GYP domain-containing protein -
  RJD40_RS07910 (RJD40_07910) - 1744368..1744841 (-) 474 WP_005597570.1 response regulator -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54753.17 Da        Isoelectric Point: 5.0073

>NTDB_id=879641 RJD40_RS07885 WP_005597561.1 1739193..1740617(+) (sbcB) [Vibrio scophthalmi strain 21FBVib0106]
MQQEHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPGVEAALITGISPQLAASKGLIEP
EFIRQIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGYI
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKIKAAQPKLFDYFLTMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWIVPVAWHPTNKNAVIVVDLAKDPQVLFDLDENALKERLYTKHSDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAD
KIGIDREQCLQNLQVLRQHPEIREKLIGLFAVEREYEKSADVDTQLYDGFFSPADRAAMDIVRQTEPEHLAALDITFSDA
RIEPLLFRYRARNFPWTLTEQEQLRWNSHCQDYFQSRMDEYMLNFENLVHEHESDTKKITLLKSVYQYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=879641 RJD40_RS07885 WP_005597561.1 1739193..1740617(+) (sbcB) [Vibrio scophthalmi strain 21FBVib0106]
ATGCAACAAGAGCACCAACCGACGTTTTTCTTCTTCGATTATGAAACGTGGGGAACCAGCCCAGCCAAAGATCGCCCAAG
CCAATTTGCGGGTGTACGCACGGACATGGACTTTAATATTATTGGCGAGCCTCTTGTCATCTATTGCCAACCACCCTCAG
ACTATTTGCCAGGAGTGGAAGCGGCACTGATTACCGGCATTTCTCCCCAACTGGCTGCAAGTAAAGGCCTGATCGAGCCT
GAATTTATCCGCCAAATTCATGAACAATTGGCAACGCCAAACACGATTAGCCTTGGTTACAATAGTATTCGTTTTGATGA
CGAAGTAACGCGCTATACTTGTTACCGCAATTTCTTTGACCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGTTGGG
ACTTACTCGATGTGATGCGTGCTTGCCATGCTTTACGCCCTGAAGGTATTGAATGGCCAGAAAACGACGAAGGCTATATT
AGCTTCAAACTTGAGCACCTTTCTGTGGCAAACGGCATTGAACACGCCAATGCGCACGATGCGATGGCTGATGTTATCGC
CACAATCGAACTGGCAAAAAAAATCAAAGCCGCACAACCAAAACTGTTTGATTACTTCCTTACCATGCGTCATAAGCGCA
AGCTCAACGAATTGGTCGATATCGTCAATATGACCCCGCTGATGCATGTCTCGGGAATGCTTGGCCGTGAATGCAACTAT
ACAAGCTGGATTGTGCCTGTCGCTTGGCACCCAACCAATAAAAATGCAGTTATTGTGGTTGATCTCGCCAAAGATCCGCA
AGTATTGTTCGATCTGGATGAGAATGCGTTGAAAGAGCGCCTATATACCAAACACAGTGATTTGGCTCCTGATGAGTTGC
CCGTTCCTGTGAAGCTGGTGCATTTGAACAAATGTCCGATTCTTGCCCCTGCGAAAACACTGACGGCAGAAAATGCCGAC
AAGATTGGTATCGATCGTGAACAGTGCTTACAAAACTTACAAGTGCTCCGTCAACACCCAGAGATCCGAGAAAAATTGAT
TGGCTTGTTCGCTGTTGAACGTGAATATGAAAAGAGCGCTGACGTTGATACTCAACTTTATGATGGATTCTTTTCACCCG
CGGATCGCGCTGCGATGGACATTGTTCGTCAAACCGAACCTGAGCACTTAGCGGCGCTTGATATCACCTTCAGCGATGCG
CGTATCGAACCGCTATTGTTCCGTTATCGTGCGCGTAACTTCCCATGGACACTCACCGAGCAAGAACAACTTCGTTGGAA
TAGCCACTGCCAGGACTACTTCCAAAGTCGCATGGACGAGTACATGCTAAATTTTGAAAACTTAGTTCACGAACATGAAA
GTGATACAAAGAAAATCACTCTATTAAAATCTGTGTATCAATACGTAGAAAAGCTTGTTTCGTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9RRT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

99.789

0.791