Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RJD40_RS04280 Genome accession   NZ_CP134280
Coordinates   896738..898084 (+) Length   448 a.a.
NCBI ID   WP_009387868.1    Uniprot ID   F9RGY7
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 891738..903084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS04265 (RJD40_04270) - 892289..893602 (+) 1314 WP_065545580.1 anaerobic C4-dicarboxylate transporter family protein -
  RJD40_RS04275 (RJD40_04280) uvrB 894400..896430 (+) 2031 WP_005593858.1 excinuclease ABC subunit UvrB -
  RJD40_RS04280 (RJD40_04285) luxO 896738..898084 (+) 1347 WP_009387868.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RJD40_RS04285 (RJD40_04290) luxU 898105..898443 (+) 339 WP_418113986.1 quorum-sensing phosphorelay protein LuxU -
  RJD40_RS04290 (RJD40_04295) - 898429..899316 (-) 888 WP_065430002.1 YvcK family protein -
  RJD40_RS04295 (RJD40_04300) moaA 899634..900623 (+) 990 WP_065430003.1 GTP 3',8-cyclase MoaA -
  RJD40_RS04300 (RJD40_04305) moaB 900714..901226 (+) 513 WP_005593866.1 molybdenum cofactor biosynthesis protein B -
  RJD40_RS04305 (RJD40_04310) moaC 901251..901730 (+) 480 WP_005593869.1 cyclic pyranopterin monophosphate synthase MoaC -
  RJD40_RS04310 (RJD40_04315) moaD 901727..901972 (+) 246 WP_005593871.1 molybdopterin synthase sulfur carrier subunit -
  RJD40_RS04315 (RJD40_04320) moaE 901974..902429 (+) 456 WP_005593872.1 molybdopterin synthase catalytic subunit MoaE -
  RJD40_RS04320 (RJD40_04325) - 902638..903054 (+) 417 WP_005593875.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49745.85 Da        Isoelectric Point: 5.1536

>NTDB_id=879634 RJD40_RS04280 WP_009387868.1 896738..898084(+) (luxO) [Vibrio scophthalmi strain 21FBVib0106]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLEFRTPDLILLDLRLPDMTGMDVLQAVKQQNPDVPVIFMTAHGSI
DTAVEAMRLGAQDFLIKPCEADRLRVTVNNAIRKATKLRTEAGTNQGYQGFIGSSHTMQAVYRTIDSAATSKASIFITGE
SGTGKEVCAEALHATSNRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDREGAAELADGGTLFLDELCEMDLDLQ
TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLGFM
SKEEGKDFIRLSPEVVDRFARYEWPGNVRQLQNVLRNVVVLNNGREIRLDMLPPPLNQPCEGVSRSVNEETETLSVHDIF
PLWLTEKNAIKLAIKACEGNIPKAAGYLDVSPSTLYRKLQGWNEKETK

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=879634 RJD40_RS04280 WP_009387868.1 896738..898084(+) (luxO) [Vibrio scophthalmi strain 21FBVib0106]
ATGGTAGAAGATACCGCCTCTGTGGCGGCACTCTATCGTTCTTATCTTACGCCGCTGGGTATCGATATTAATATCGTCGG
TACCGGGCGCGATGCGATTGAAAGTCTTGAATTTCGCACACCCGATTTGATCTTGCTCGATTTGCGCTTGCCCGATATGA
CAGGGATGGATGTTCTACAAGCGGTCAAACAGCAAAACCCGGATGTGCCAGTTATTTTCATGACTGCTCATGGCTCGATC
GATACCGCGGTTGAGGCGATGCGGTTAGGCGCACAAGATTTCTTGATCAAACCCTGTGAAGCGGACCGACTGCGCGTGAC
GGTGAACAATGCGATTCGCAAAGCAACGAAGCTAAGAACCGAAGCGGGAACCAATCAAGGCTATCAAGGGTTTATCGGCA
GTAGTCATACCATGCAAGCGGTCTATCGGACGATTGACTCGGCGGCGACCAGTAAAGCGAGTATTTTCATTACTGGTGAA
AGTGGTACCGGTAAAGAGGTGTGTGCAGAGGCATTGCATGCCACCAGTAATCGTGGCGATAAACCGTTTATTGCCATCAA
CTGTGCTGCCATTCCTAAAGACTTGATTGAAAGTGAATTGTTTGGTCACGTTAAAGGGGCCTTTACTGGCGCGGCAACCG
ATCGTGAAGGCGCTGCGGAACTGGCCGATGGCGGAACCCTGTTTTTGGATGAATTGTGCGAAATGGATCTGGACTTGCAG
ACCAAATTACTGCGTTTTATCCAAACCGGAACCTTTCAAAAGGTGGGTTCATCCAAAATGAAAAGTGTGGATGTACGTTT
TGTTTGTGCAACCAACCGAGACCCATGGAAAGAAGTACAGGAAGGGCGCTTTCGTGAAGACTTGTATTATCGCCTTTACG
TTATCCCACTGCACTTACCACCTTTGCGTGAGCGTGGCGAAGATGTCATTGAAATTGCATACTCCTTGCTAGGCTTTATG
TCGAAAGAAGAAGGCAAAGATTTTATCCGTCTCTCGCCGGAAGTGGTTGATCGCTTTGCTCGCTATGAGTGGCCTGGTAA
TGTGCGTCAATTGCAGAACGTACTGAGAAATGTGGTGGTGCTTAACAATGGCCGTGAAATTCGCTTAGATATGTTACCAC
CACCGTTGAACCAACCTTGTGAGGGCGTGTCACGCAGCGTCAATGAAGAAACAGAGACCTTGTCGGTACACGATATTTTC
CCGTTATGGCTGACGGAAAAAAATGCCATTAAGCTGGCGATAAAAGCGTGTGAGGGAAATATTCCGAAAGCGGCTGGTTA
TCTCGATGTTAGCCCATCGACACTATACCGTAAGCTACAAGGTTGGAATGAAAAAGAGACCAAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(132-297)

Bacterial regulatory protein, Fis family (HTH_8)

(402-440)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9RGY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.618

99.33

0.85