Detailed information NTG0879633

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: RJD40_RS02625
• Genome accession: NZ_CP134280
• Coordinates: 556427..559810 (-)
• Length: 1127 a.a.
• NCBI ID: WP_418113908.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain 21FBVib0106
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 551427..564810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD40_RS02610 (RJD40_02615)	-	551915..552940 (-)	1026	WP_005593235.1	ABC transporter permease	-
RJD40_RS02615 (RJD40_02620)	-	552943..553929 (-)	987	WP_005593236.1	ABC transporter permease	-
RJD40_RS02620 (RJD40_02625)	-	554102..555784 (-)	1683	WP_418113907.1	ABC transporter substrate-binding protein	-
RJD40_RS02625 (RJD40_02630)	chiS	556427..559810 (-)	3384	WP_418113908.1	response regulator	Regulator
RJD40_RS02630 (RJD40_02635)	rsmC	560004..561026 (-)	1023	WP_005593239.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
RJD40_RS02635 (RJD40_02640)	-	561123..562208 (-)	1086	WP_065429830.1	AI-2E family transporter	-
RJD40_RS02640 (RJD40_02645)	hemL	562552..563844 (-)	1293	WP_005593243.1	glutamate-1-semialdehyde 2,1-aminomutase	-
RJD40_RS02645 (RJD40_02650)	erpA	564130..564471 (+)	342	WP_005593244.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127469.62 Da
• Isoelectric Point: 5.5890

>NTDB_id=879633 RJD40_RS02625 WP_418113908.1 556427..559810(-) (chiS) [Vibrio scophthalmi strain 21FBVib0106]
MFKLYRKQRFKRLQNTLMLAFLALSITPLTVIALFFLNSHSQDLQEQSTSHLLSVRDSKHQQIVDYLDARESEVMGFVRS
ELAYASGGRFYGLVNAFQSLGLDINQARDYAQQRYIQGSGNQIKTSILPQSDIYNGTERYRLLHTRYHRAYLELLKRSDF
DDILLVDINGNVTYSIYKNDNFGTNLISGKYKDDNLGLAFQKLKKNVTSVRKTNEDYTPVFFSDFETHHGKSYAWIGAPI
IQQGYLHSYAMFRLPNNSLTKLMADNNNIWSIKTLLVGEDHKPRTLAYSQEEVDNSLTIIDRAFNNPASVGTFTNALGEE
IIAAYSHIQTKGIDWALVVEVAEKEAFARVQQLERLFVFAMLFAIIVVVIASHYLSNFITLPLLKLTWSAEKASAGDLNA
EINTQRKDEIGRLAIAFDRMQRSIRDKIQLIREQNEELEDNLTIIQKKNDELQLANKLKDEFLATTSHELRTPLHGMIGI
AEALISGASGPITADHKYQLDIIISSGQRLTTLVDDLLDYHKMRYGNLDIETCGVDLSSATRLVLELSSHLLGNKQIRII
NQVAAEPVWVAADPQRLEQVLYNLVGNAIKYTREGKIVISATVVDDKIRVQVVDTGQGIPADQIEHIFEPLIQASDDASR
YRQGAGLGLSISRQLVELMDGSLYVSSQPMVGTTFSFTLPIATEAQIAQASHNDSIHFKVPESYELEETSISSLPENPNG
QLLLVVDDEPVNLRVLDSFLRIAGYRVRTAKDGFEALQQIEQERPELVLLDVMMPGLSGYQVCETIRENYSQSELPVIML
TALNQPDDRIRGFNSGANDYLSKPFNKQELAARILVHLSASQAELRKAENHRLQQELKQRAAVEASLLETQGRLLEQLES
APEAIICIRDDGRIRFANEAAARLFKRSTEQLKRSNADEILGPKFLDVEQEHYCGKVDIYVEDTRQHLDADILRLPLESG
LKSMYIFDNGGGANAVRIHNLETAIEALSSYAFDGDKGKLQELKELGGEFTRLADRVTGEHKSKQEVMREVLVDAMTTAI
NYWENSSGQTKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSLEYILDNSHEMNAERALIEELRDK
LQHLLTS

Nucleotide

• Length: 3384 bp

>NTDB_id=879633 RJD40_RS02625 WP_418113908.1 556427..559810(-) (chiS) [Vibrio scophthalmi strain 21FBVib0106]
ATGTTTAAGTTGTATCGAAAACAAAGATTCAAACGCCTGCAAAATACACTCATGCTGGCATTTTTGGCGCTCAGTATCAC
GCCTCTAACTGTGATCGCCCTCTTCTTCCTCAATTCGCACAGCCAAGATCTGCAAGAACAAAGCACTTCACATCTTCTCT
CTGTACGAGATAGTAAGCATCAACAGATTGTTGATTATCTTGATGCACGCGAATCGGAAGTGATGGGGTTTGTCCGTTCA
GAGCTCGCTTACGCCAGTGGCGGCCGCTTCTATGGCTTAGTCAATGCATTCCAAAGCCTCGGTTTGGACATCAACCAGGC
TCGCGACTATGCGCAGCAACGCTATATTCAAGGCTCAGGGAATCAGATTAAAACGTCAATTTTGCCGCAATCGGACATTT
ATAACGGTACAGAGCGCTATCGCTTACTACATACTCGTTATCATCGCGCCTATTTAGAACTGTTAAAACGTTCTGATTTT
GACGACATTTTGTTGGTCGATATTAACGGCAACGTTACCTATTCCATCTATAAAAACGATAACTTCGGTACCAACCTAAT
CTCTGGTAAATACAAAGACGATAACTTAGGCTTGGCCTTTCAAAAACTGAAGAAAAATGTCACGTCGGTACGTAAGACCA
ATGAAGACTACACGCCAGTGTTCTTCTCTGACTTTGAAACTCATCATGGAAAATCTTACGCTTGGATCGGTGCGCCAATC
ATCCAACAAGGCTACCTGCATAGCTACGCGATGTTCCGTCTACCAAATAATAGTTTGACCAAATTGATGGCTGACAATAA
CAACATTTGGTCGATAAAAACCTTACTGGTTGGTGAAGACCACAAGCCACGTACCCTTGCTTATAGCCAAGAAGAGGTTG
ATAACAGCCTGACTATTATCGATCGTGCCTTTAACAATCCAGCGTCAGTAGGCACCTTTACCAATGCTCTCGGTGAAGAG
ATCATTGCTGCCTACAGCCATATCCAAACCAAAGGTATTGACTGGGCACTTGTGGTGGAAGTTGCTGAAAAAGAGGCCTT
TGCGCGTGTACAACAGCTTGAGCGATTGTTTGTTTTTGCCATGCTGTTTGCCATTATCGTGGTGGTCATCGCTTCGCACT
ACCTCTCCAACTTCATCACGCTACCATTATTGAAATTAACGTGGTCGGCAGAAAAAGCCTCCGCCGGTGATCTCAATGCT
GAAATCAACACTCAACGTAAAGATGAGATTGGCCGACTCGCCATTGCATTTGATCGCATGCAGCGTTCTATTCGTGACAA
AATCCAGCTTATTCGCGAACAAAATGAAGAGCTGGAAGATAACCTCACGATAATCCAAAAGAAAAACGATGAATTGCAGC
TGGCCAACAAACTTAAAGATGAGTTTCTTGCCACCACTTCACACGAATTACGCACCCCACTGCATGGCATGATTGGTATT
GCTGAAGCGCTTATTTCAGGGGCTAGTGGCCCGATTACTGCCGATCATAAATATCAACTCGATATTATCATCAGCAGCGG
ACAACGCTTAACCACCTTAGTTGACGATCTACTCGACTATCACAAAATGCGTTATGGCAATCTTGACATCGAAACCTGTG
GTGTCGACTTATCGAGTGCCACTCGCCTTGTGCTAGAGCTCTCGTCACACCTACTGGGTAACAAACAGATCCGCATTATT
AACCAAGTGGCGGCTGAGCCAGTTTGGGTTGCGGCGGATCCACAACGTCTTGAACAGGTGCTTTATAATCTCGTTGGTAA
CGCGATCAAATACACCCGCGAAGGTAAAATTGTTATTTCTGCCACGGTAGTAGACGATAAAATTCGCGTGCAAGTGGTTG
ATACTGGCCAAGGCATTCCTGCCGACCAAATCGAGCATATTTTTGAACCATTAATCCAAGCCAGCGATGATGCCAGCCGC
TACCGTCAGGGGGCAGGCCTTGGTCTGTCTATTAGCCGCCAGTTAGTTGAATTGATGGATGGCTCACTCTATGTCAGCAG
CCAACCAATGGTCGGCACAACATTTAGCTTTACCTTACCGATCGCCACCGAGGCGCAAATCGCGCAAGCGAGCCATAACG
ATAGCATCCACTTTAAAGTGCCTGAGAGCTATGAACTTGAAGAAACGAGCATCAGTAGCCTACCTGAGAACCCTAATGGC
CAATTGCTGCTTGTTGTGGATGATGAACCGGTAAACTTAAGAGTATTGGACAGTTTCTTAAGAATCGCGGGCTATCGTGT
ACGCACGGCGAAAGATGGGTTTGAAGCCTTACAACAAATTGAACAAGAAAGACCGGAACTGGTGCTACTGGATGTGATGA
TGCCGGGCTTAAGTGGCTATCAAGTCTGTGAAACCATTCGTGAAAATTACAGCCAGTCAGAATTGCCTGTCATTATGCTA
ACCGCCTTAAACCAGCCTGATGACCGTATTCGTGGCTTCAATTCCGGCGCCAATGACTACTTATCAAAACCATTCAATAA
ACAAGAGCTGGCGGCCCGTATTTTAGTGCACCTCTCAGCAAGCCAAGCTGAATTGCGTAAAGCGGAAAACCACCGTTTAC
AGCAGGAATTAAAACAACGCGCCGCCGTGGAAGCGAGCTTGCTCGAAACACAAGGTCGATTGTTAGAACAACTTGAATCT
GCTCCAGAAGCGATAATCTGTATCCGGGACGATGGTCGAATCCGCTTTGCTAACGAAGCGGCAGCACGACTGTTTAAACG
CAGCACCGAACAGCTAAAACGTTCAAATGCAGACGAAATTTTAGGCCCTAAGTTCCTTGATGTTGAGCAAGAGCACTATT
GCGGTAAGGTTGATATCTACGTTGAGGATACCCGCCAACATCTCGATGCCGACATTCTTCGTCTGCCACTGGAATCAGGC
CTTAAGTCAATGTACATCTTTGACAATGGTGGCGGTGCCAATGCGGTACGTATTCACAACCTAGAGACCGCCATAGAGGC
ACTTTCCAGCTATGCGTTTGACGGTGACAAAGGCAAGCTACAAGAGCTCAAAGAATTAGGCGGTGAATTTACTCGTCTTG
CTGACCGCGTCACGGGCGAACATAAGTCGAAACAGGAAGTGATGCGCGAAGTATTGGTGGATGCAATGACAACCGCAATC
AATTACTGGGAAAACAGTTCAGGCCAAACCAAGTTTGCCTTTGCTGAGCAAAGTGGTTTATGGCGCGTCTATCTAGACCG
CAGCACTCTGCAAACGCGTACCTTAGATAAATACCTACGTATCGAAACGCTACCGAAAACACCACGTTGGCGTACCGTGC
TGAGTTCACTGGAATATATTCTTGATAACAGCCACGAGATGAATGCCGAACGAGCACTGATTGAAGAGCTACGAGATAAG
CTTCAACACCTACTGACCAGTTAG

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (878-925)

• HAMP domain (HAMP) (375-426)

• Response regulator receiver domain (Response_reg) (724-834)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-681)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	74.202	100	0.743