Detailed information NTG0879625

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RJD40_RS01015
• Genome accession: NZ_CP134280
• Coordinates: 227818..228825 (+)
• Length: 335 a.a.
• NCBI ID: WP_065429686.1
• Uniprot ID: A0A1B1NKF4
• Organism: Vibrio scophthalmi strain 21FBVib0106
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 222818..233825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD40_RS01000 (RJD40_01000)	-	223271..224545 (-)	1275	WP_418113782.1	malic enzyme-like NAD(P)-binding protein	-
RJD40_RS01005 (RJD40_01005)	rpmE	224792..225010 (-)	219	WP_005593644.1	50S ribosomal protein L31	-
RJD40_RS01010 (RJD40_01010)	priA	225329..227530 (+)	2202	WP_418113783.1	primosomal protein N'	-
RJD40_RS01015 (RJD40_01015)	cytR	227818..228825 (+)	1008	WP_065429686.1	DNA-binding transcriptional regulator CytR	Regulator
RJD40_RS01020 (RJD40_01020)	-	229051..229587 (+)	537	WP_418113784.1	SPOR domain-containing protein	-
RJD40_RS01025 (RJD40_01025)	hslV	229799..230341 (+)	543	WP_418113785.1	ATP-dependent protease subunit HslV	-
RJD40_RS01030 (RJD40_01030)	hslU	230380..231723 (+)	1344	WP_005593653.1	HslU--HslV peptidase ATPase subunit	-
RJD40_RS01035 (RJD40_01035)	frdD	231891..232268 (-)	378	WP_005593654.1	fumarate reductase subunit FrdD	-
RJD40_RS01040 (RJD40_01040)	frdC	232280..232663 (-)	384	WP_005593655.1	fumarate reductase subunit FrdC	-
RJD40_RS01045 (RJD40_01045)	-	232665..233423 (-)	759	WP_005593656.1	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36993.61 Da
• Isoelectric Point: 6.6392

>NTDB_id=879625 RJD40_RS01015 WP_065429686.1 227818..228825(+) (cytR) [Vibrio scophthalmi strain 21FBVib0106]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEVVNYLTQLGHKRIAQISGPETATLCQFRQQGYQQALRRAGITMNPTYSTFGEFTFEAGAKAVRQLLALPEPPTA
IFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRKSAAPPRAL

Nucleotide

• Length: 1008 bp

>NTDB_id=879625 RJD40_RS01015 WP_065429686.1 227818..228825(+) (cytR) [Vibrio scophthalmi strain 21FBVib0106]
ATGGCGACAATGAAGGATGTTGCCCAGCTCGCGGGAGTTTCAACAGCGACAGTATCGAGGGCGCTGATGAATCCTGAAAA
AGTCTCTTCTGCCACGCGTAAGCGCGTTGAAGACGCTGTGTTAGAAGCTGGCTATTCCCCAAATTCTTTAGCGCGTAATT
TACGCCGCAACGAATCGAAAACGATCATCGCGATCATTCCTGATATCTGCGATCCTTATTACACGGAGATCATTCGTGGC
ATTGAAGATGCAGCTATGGAGCATGGTTATATTGTTCTGTTAGGTGATAGCGGTCAGCAGAAACGACGTGAAAATTCCTT
TGTGAATTTGGTCTTTACTAAGCAAGCTGACGGCATGCTGCTGCTTGGTACTGATCTACCGTTTGATGTCAGCAAACCTG
AGCAAAAAAACCTACCGCCAATGGTCATGGCGTGTGAGTTTGCCCCTGAGCTTGAACTACCAACAGTTCACATTGATAAC
CTGACCTCTGCGTTTGAAGTGGTCAACTATCTTACTCAGCTTGGTCATAAGCGCATCGCACAAATTTCCGGGCCAGAAAC
GGCGACTCTGTGTCAATTCCGTCAGCAAGGCTATCAACAAGCATTGCGCCGCGCGGGGATTACAATGAACCCGACTTACA
GCACATTTGGTGAGTTCACTTTTGAGGCGGGTGCCAAAGCGGTCAGACAATTACTAGCACTGCCTGAGCCACCGACGGCG
ATTTTCTGTCATAACGATGCGATGGCGATTGGTGCTATTCAAGAAGCAAAACGTCTTGGTTTACGGGTACCACAAGATTT
ATCGGTAGTGGGTTTTGATGACATTCAGTTTGCTCAATATTGCGATCCACCGCTGACCACCATCTCACAGCCTCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTAGAGTTACTACGTGGCCATGATGTCCGTGCGGGCTCGCGTCTATTGGAA
ACGCAATTAGTGGTACGTAAGAGTGCGGCGCCACCAAGAGCTCTCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A1B1NKF4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	94.578	99.104	0.937
cytR	Vibrio parahaemolyticus RIMD 2210633	90.09	99.403	0.896