Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   RJD39_RS15910 Genome accession   NZ_CP134278
Coordinates   46616..47713 (-) Length   365 a.a.
NCBI ID   WP_406734487.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 41616..52713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS15895 (RJD39_15875) glpD 41728..43284 (+) 1557 WP_406734482.1 glycerol-3-phosphate dehydrogenase -
  RJD39_RS15900 (RJD39_15880) - 43345..44010 (+) 666 WP_406734484.1 PilZ domain-containing protein -
  RJD39_RS15905 (RJD39_15885) luxQ 44049..46616 (-) 2568 WP_406734486.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  RJD39_RS15910 (RJD39_15890) luxP 46616..47713 (-) 1098 WP_406734487.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  RJD39_RS15915 (RJD39_15895) - 47815..48138 (-) 324 WP_268673701.1 GIY-YIG nuclease family protein -
  RJD39_RS15920 (RJD39_15900) - 48131..48787 (-) 657 WP_406734489.1 YceH family protein -
  RJD39_RS15925 (RJD39_15905) - 48821..49015 (-) 195 WP_009384378.1 hypothetical protein -
  RJD39_RS15930 (RJD39_15910) - 49206..49526 (+) 321 WP_005599404.1 DUF496 family protein -
  RJD39_RS15935 (RJD39_15915) - 49928..50164 (+) 237 WP_005599405.1 YgjV family protein -
  RJD39_RS15940 (RJD39_15920) glpK 50290..51795 (-) 1506 WP_406734491.1 glycerol kinase GlpK -
  RJD39_RS15945 (RJD39_15925) - 51906..52499 (-) 594 WP_406734941.1 OmpA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41336.42 Da        Isoelectric Point: 5.0355

>NTDB_id=879620 RJD39_RS15910 WP_406734487.1 46616..47713(-) (luxP) [Vibrio scophthalmi strain 21FBVib0096]
MYKTTLAALLSLISLNAMAHSTQVLNGYWQYDEYLESHVRQKVLTDQLSQAVREEPTTIEKAQEQPISISVVYPGQQISD
YWVRNIKAFEARLDKLGIKYNINQVFTRPNVDMRQQSLSLLEAIQNNSDYLIFTLDTTRHRKFIEHVISSTDTKLILQNI
TTPVRAWDDHQPFMYVGFDHQLGTKHIENYYKEKTAAGSKYSVLYFSEGYISDARGDTFIEEMSHHDGYKLSSSFYTKAT
RESGFNAAMNAVEKDPDISFIYACSTDVALGAVDALKQLKRGDILVNGWGGGSAELEAIEQGDIDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPHVYSGDFEVVTSADSGEKIDILKRRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=879620 RJD39_RS15910 WP_406734487.1 46616..47713(-) (luxP) [Vibrio scophthalmi strain 21FBVib0096]
ATGTATAAAACGACTTTAGCTGCGCTACTGTCTCTCATCTCATTAAACGCGATGGCGCATTCGACGCAAGTGTTAAATGG
CTATTGGCAGTATGATGAATATCTAGAATCACACGTAAGGCAAAAGGTATTGACGGACCAACTTTCGCAGGCGGTGAGAG
AGGAACCGACCACTATAGAAAAAGCGCAAGAACAGCCTATTTCAATCTCTGTGGTTTATCCAGGCCAACAAATTTCAGAT
TACTGGGTTCGTAACATTAAAGCGTTTGAAGCCCGCTTGGATAAACTGGGCATCAAATATAATATTAATCAGGTATTTAC
AAGGCCTAATGTAGATATGCGACAACAAAGCTTGTCGTTACTCGAAGCGATTCAAAACAACTCAGATTACCTAATTTTTA
CCTTAGATACCACTCGCCATCGAAAATTTATCGAGCATGTAATCAGCTCAACCGATACCAAGCTCATTCTACAAAATATT
ACCACTCCGGTGCGCGCTTGGGATGATCATCAGCCATTTATGTATGTTGGTTTTGACCACCAGCTAGGTACAAAGCACAT
CGAAAATTACTACAAAGAAAAAACCGCAGCTGGTAGTAAGTATTCCGTGTTGTACTTTTCAGAAGGCTACATTAGTGATG
CGCGTGGAGATACCTTCATTGAAGAGATGAGCCATCATGACGGCTATAAGTTGAGCTCTTCATTCTACACCAAAGCGACC
AGAGAATCGGGTTTCAACGCAGCCATGAATGCGGTGGAAAAAGATCCGGATATTTCATTTATTTATGCTTGTTCAACCGA
TGTCGCACTGGGTGCCGTTGATGCTCTGAAACAACTCAAACGAGGCGATATTTTGGTTAATGGCTGGGGGGGAGGCTCTG
CGGAGTTAGAGGCGATCGAACAAGGTGATATTGATGTGACGGTGATGCGTATGAACGATGACACCGGCATTGCGATGGCT
GAGGCGATTAAGTGGGACTTAGAAGGTAAGCCAGTTCCCCATGTTTATTCGGGTGATTTTGAAGTGGTAACGAGTGCCGA
TAGTGGTGAAAAGATCGACATCTTAAAGCGTCGTGCATTTAGGTACTCAGACCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.562

100

0.636