Detailed information NTG0879619

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: RJD39_RS15170
• Genome accession: NZ_CP134277
• Coordinates: 3238628..3242011 (-)
• Length: 1127 a.a.
• NCBI ID: WP_406734102.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain 21FBVib0096
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3233628..3247011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD39_RS15155 (RJD39_15135)	-	3234116..3235141 (-)	1026	WP_406732656.1	ABC transporter permease	-
RJD39_RS15160 (RJD39_15140)	-	3235144..3236130 (-)	987	WP_009733664.1	ABC transporter permease	-
RJD39_RS15165 (RJD39_15145)	-	3236303..3237985 (-)	1683	WP_268673490.1	ABC transporter substrate-binding protein	-
RJD39_RS15170 (RJD39_15150)	chiS	3238628..3242011 (-)	3384	WP_406734102.1	response regulator	Regulator
RJD39_RS15175 (RJD39_15155)	rsmC	3242205..3243227 (-)	1023	WP_009733666.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
RJD39_RS15180 (RJD39_15160)	-	3243324..3244409 (-)	1086	WP_406732659.1	AI-2E family transporter	-
RJD39_RS15185 (RJD39_15165)	hemL	3244684..3245976 (-)	1293	WP_406732660.1	glutamate-1-semialdehyde 2,1-aminomutase	-
RJD39_RS15190 (RJD39_15170)	erpA	3246262..3246603 (+)	342	WP_005593244.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127478.63 Da
• Isoelectric Point: 5.6476

>NTDB_id=879619 RJD39_RS15170 WP_406734102.1 3238628..3242011(-) (chiS) [Vibrio scophthalmi strain 21FBVib0096]
MFKLYRKQRFKRLQNTLMLAFLALSITPLTVIALFFLNSHSQDLQEQSTSHLLSVRDSKHQQIVDYLDARESEVMGFVRS
ELAYASGGRFYGLVNAFQSLGLDINQARDYAQQRYIQGSGNQIKTSILPQSDIYNGTERYRLLHTRYHRAYLELLKRSDF
DDILLVDINGNVTYSIYKHDNFGTNLISGKYKDDNLGLAFQKLKKNVTSVRKTNEDYTPVFFSDFETHHGKSYAWIGAPI
IQQGYLHSYAMFRLPNNSLTKLMADNNNIWSIKTLLVGENHKPRTLAYSQEEVDNSLTIIDRAFNNPASVGTFTNALGEE
IIAAYSHIQTKGIDWALVVEVAEKEAFARVQQLERLFVFAMLFAIIVVVIASHYLSNFITLPLLKLTWSAEKASAGDLNA
EINTQRKDEIGRLAIAFDRMQRSIRDKIQLIREQNEELEDNLTIIQKKNDELQLANKLKDEFLATTSHELRTPLHGMIGI
AEALISGASGPITADHKYQLDIIISSGQRLTTLVDDLLDYHKMRYGNLDIETCGVDLSSATRLVLELSSHLLGNKQIRII
NQVAAEPVWVAADPQRLEQVLYNLVGNAIKYTREGKIVISATVVDDKIRVQVVDTGQGIPADQIEHIFEPLIQASDDASR
YRQGAGLGLSISRQLVELMDGSLYVSSQPMVGTTFSFTLPIATEAQIAQASHNDSIHFKVPESYELEETSISSLPENPDG
QLLLVVDDEPVNLRVLDSFLRIAGYRVRTAKDGFEALQQIEQERPELVLLDVMMPGLSGYQVCETIRENYSQSELPVIML
TALNQPDDRIRGFNSGANDYLSKPFNKQELAARILVHLSASQAELRKAENHRLQQELKQRAAVEASLLETQGRLLEQLES
APEAIICIRDDGRIRFANEAAARLFKRSTEQLKRSNADEILGPKFLDVEQDHYCGKVDIYVEDTRQHLDADILRLPLESG
LKSMYIFDNGGGANAVRIHNLETAIEALSSYAFDGDKGKLQELKELGGEFTRLADRVTGEHKSKQEVMREVLVDAMTTAI
NYWENSSGQTKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSLEYILDNSHEMNAERALIEELRDK
LQHLLTS

Nucleotide

• Length: 3384 bp

>NTDB_id=879619 RJD39_RS15170 WP_406734102.1 3238628..3242011(-) (chiS) [Vibrio scophthalmi strain 21FBVib0096]
ATGTTTAAGTTGTATCGAAAACAAAGATTCAAACGCCTGCAAAATACACTCATGCTGGCATTTTTGGCGCTCAGTATCAC
GCCTCTAACTGTGATCGCCCTCTTCTTCCTCAATTCGCATAGCCAAGATCTGCAAGAGCAAAGCACTTCACATCTTCTCT
CTGTACGAGATAGTAAGCACCAACAGATTGTTGATTATCTTGATGCACGCGAATCGGAAGTGATGGGGTTTGTCCGTTCA
GAGCTCGCTTACGCCAGTGGCGGCCGCTTCTATGGCTTAGTCAATGCGTTCCAAAGCCTCGGTTTGGACATCAACCAAGC
TCGTGATTATGCGCAGCAACGCTATATTCAAGGCTCTGGGAATCAGATTAAAACGTCAATTTTGCCGCAATCGGACATTT
ATAACGGTACAGAGCGCTATCGCTTACTACATACTCGTTATCATCGCGCCTATTTAGAACTGTTAAAACGTTCTGATTTT
GACGACATTTTGTTGGTAGATATTAACGGCAACGTCACTTACTCCATCTATAAGCACGATAACTTCGGTACCAACCTAAT
CTCTGGCAAATACAAAGACGATAACTTAGGTTTGGCCTTTCAAAAACTGAAGAAAAATGTCACGTCGGTACGTAAGACCA
ATGAAGACTACACGCCAGTGTTCTTCTCTGACTTCGAAACTCATCATGGAAAATCTTACGCTTGGATCGGTGCGCCAATC
ATCCAACAAGGCTACCTACATAGCTACGCGATGTTCCGTCTACCAAATAATAGTTTGACCAAATTGATGGCTGACAATAA
CAACATTTGGTCGATAAAAACCTTACTGGTTGGTGAAAACCACAAGCCACGTACCCTTGCTTATAGCCAAGAAGAGGTTG
ATAACAGCCTGACTATTATCGATCGTGCCTTTAATAATCCAGCGTCAGTAGGCACCTTTACCAATGCTCTCGGTGAAGAG
ATTATTGCCGCCTACAGCCATATCCAAACCAAAGGTATTGACTGGGCACTTGTGGTGGAAGTCGCTGAAAAAGAAGCCTT
TGCACGTGTACAACAACTTGAACGACTGTTTGTTTTTGCCATGTTGTTTGCCATTATCGTGGTGGTTATCGCTTCGCACT
ACCTCTCGAACTTCATCACGCTACCGCTGTTAAAGCTGACATGGTCAGCAGAAAAAGCATCAGCCGGTGATCTCAATGCG
GAAATCAATACTCAACGTAAAGATGAGATTGGCAGACTCGCCATTGCGTTTGATCGCATGCAGCGTTCGATTCGAGACAA
AATCCAGCTTATTCGCGAACAAAATGAAGAGCTGGAAGATAACCTCACGATAATCCAGAAGAAAAACGATGAATTGCAGT
TGGCCAACAAACTTAAAGATGAGTTTCTTGCCACCACTTCACACGAATTACGCACCCCACTGCATGGCATGATTGGCATT
GCAGAAGCGCTTATTTCGGGTGCTAGTGGACCAATTACTGCCGATCATAAATATCAACTCGATATTATCATCAGCAGCGG
ACAACGCTTAACCACCTTAGTTGACGATCTACTCGACTATCACAAAATGCGTTATGGCAATCTTGACATCGAAACCTGTG
GTGTCGACTTATCGAGTGCCACTCGCCTTGTGCTAGAGCTCTCGTCACATCTGCTGGGTAACAAACAGATCCGCATTATT
AACCAAGTGGCGGCTGAGCCAGTTTGGGTTGCGGCGGATCCACAACGTCTTGAACAGGTGCTTTATAATCTCGTTGGTAA
CGCGATCAAATACACCCGAGAAGGTAAAATTGTTATTTCTGCCACGGTAGTAGACGATAAAATCCGCGTGCAAGTAGTCG
ACACTGGCCAAGGCATTCCTGCCGACCAAATCGAGCATATTTTCGAACCATTAATCCAAGCCAGCGATGATGCCAGCCGC
TACCGTCAGGGTGCAGGCCTAGGTCTGTCTATTAGCCGCCAGTTAGTTGAATTGATGGATGGCTCACTCTATGTCAGCAG
CCAACCAATGGTCGGCACAACATTTAGCTTTACCTTACCGATTGCCACCGAAGCGCAAATCGCGCAAGCGAGCCATAACG
ATAGCATCCACTTTAAAGTGCCTGAGAGCTATGAACTAGAAGAAACGAGCATCAGTAGCCTCCCTGAGAACCCTGATGGC
CAATTGCTGCTTGTTGTGGATGATGAACCGGTAAACTTAAGAGTATTGGACAGTTTCTTGAGAATCGCGGGCTATCGTGT
ACGCACGGCGAAAGATGGGTTTGAAGCCTTACAGCAAATTGAACAAGAAAGACCGGAACTGGTGTTACTGGATGTGATGA
TGCCGGGCTTAAGTGGCTATCAAGTGTGTGAAACCATTCGTGAAAATTACAGCCAGTCAGAATTGCCTGTCATTATGTTA
ACTGCCTTAAACCAGCCTGATGACCGTATTCGTGGCTTCAATTCCGGCGCCAATGACTACTTATCAAAACCATTCAATAA
ACAAGAGCTGGCGGCCCGTATTTTGGTGCACCTCTCAGCAAGCCAAGCTGAATTGCGCAAAGCGGAAAACCACCGTTTAC
AGCAAGAATTAAAACAACGCGCCGCAGTGGAAGCGAGCTTGCTCGAAACACAAGGTCGATTGCTAGAGCAACTTGAATCT
GCTCCAGAAGCGATAATCTGTATCCGGGACGATGGTCGAATCCGCTTTGCTAACGAAGCGGCTGCACGACTATTTAAACG
CAGCACCGAACAGCTAAAACGTTCAAATGCAGACGAAATCTTAGGCCCTAAGTTCCTTGATGTTGAGCAAGACCACTATT
GCGGTAAGGTTGATATCTACGTTGAGGATACCCGCCAACATCTCGATGCCGACATTCTGCGTCTGCCTCTGGAATCAGGC
CTTAAGTCAATGTACATCTTTGACAATGGCGGCGGCGCCAATGCGGTGCGTATTCACAACCTAGAGACCGCCATAGAGGC
ACTTTCAAGCTATGCGTTTGACGGTGACAAGGGTAAGTTACAAGAACTCAAAGAATTGGGCGGTGAATTTACTCGCCTTG
CAGACCGTGTCACGGGTGAACATAAGTCGAAACAGGAAGTGATGCGCGAAGTATTGGTGGATGCAATGACAACCGCAATC
AATTACTGGGAAAACAGTTCAGGCCAAACCAAGTTTGCCTTTGCTGAGCAAAGTGGTTTATGGCGCGTCTATCTAGACCG
CAGTACTCTGCAAACGCGTACCTTGGATAAGTACCTACGTATCGAAACGCTACCGAAAACACCACGCTGGCGTACCGTAC
TGAGCTCACTGGAATATATTCTTGATAACAGCCACGAGATGAATGCCGAACGAGCACTGATTGAAGAGCTGCGAGATAAG
CTTCAACACCTGCTTACCAGCTAG

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-426)

• Response regulator receiver domain (Response_reg) (724-834)

• PAS fold (PAS) (875-916)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-681)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	74.025	100	0.741