Detailed information NTG0879611

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RJD39_RS13640
• Genome accession: NZ_CP134277
• Coordinates: 2915665..2916720 (+)
• Length: 351 a.a.
• NCBI ID: WP_257784174.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain 21FBVib0096
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2910665..2921720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD39_RS13625 (RJD39_13600)	-	2911002..2912276 (-)	1275	WP_406732488.1	malic enzyme-like NAD(P)-binding protein	-
RJD39_RS13630 (RJD39_13605)	rpmE	2912687..2912905 (-)	219	WP_005593644.1	50S ribosomal protein L31	-
RJD39_RS13635 (RJD39_13610)	priA	2913224..2915425 (+)	2202	WP_406732490.1	primosomal protein N'	-
RJD39_RS13640 (RJD39_13615)	cytR	2915665..2916720 (+)	1056	WP_257784174.1	DNA-binding transcriptional regulator CytR	Regulator
RJD39_RS13645 (RJD39_13620)	-	2916938..2917474 (+)	537	WP_268674711.1	SPOR domain-containing protein	-
RJD39_RS13650 (RJD39_13625)	hslV	2917723..2918265 (+)	543	WP_406732492.1	ATP-dependent protease subunit HslV	-
RJD39_RS13655 (RJD39_13630)	hslU	2918304..2919647 (+)	1344	WP_005593653.1	HslU--HslV peptidase ATPase subunit	-
RJD39_RS13660 (RJD39_13635)	frdD	2919815..2920192 (-)	378	WP_406732495.1	fumarate reductase subunit FrdD	-
RJD39_RS13665 (RJD39_13640)	frdC	2920204..2920587 (-)	384	WP_005593655.1	fumarate reductase subunit FrdC	-
RJD39_RS13670 (RJD39_13645)	-	2920589..2921347 (-)	759	WP_005593656.1	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 38805.85 Da
• Isoelectric Point: 7.6849

>NTDB_id=879611 RJD39_RS13640 WP_257784174.1 2915665..2916720(+) (cytR) [Vibrio scophthalmi strain 21FBVib0096]
MAKALPPKELTKRVTFMATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIA
IIPDICDPYYTEIIRGIEDAAMEHGYIVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMA
CEFAPELELPTVHIDNLTSAFEVVNYLTQLGHKRIAQISGPETATLCQFRQQGYQQALRRAGITMNPTYSTFGEFTFEAG
AKAVRQLLALPEPPTAIFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMML
ELLRGHDVRAGSRLLETQLVVRKSAAPPRAL

Nucleotide

• Length: 1056 bp

>NTDB_id=879611 RJD39_RS13640 WP_257784174.1 2915665..2916720(+) (cytR) [Vibrio scophthalmi strain 21FBVib0096]
GTGGCCAAGGCGCTACCGCCAAAGGAACTAACTAAGAGGGTTACATTTATGGCGACAATGAAGGATGTTGCCCAGCTCGC
GGGAGTTTCAACAGCGACGGTATCGAGGGCGCTGATGAATCCTGAAAAAGTCTCTTCTGCCACGCGTAAGCGCGTTGAAG
ACGCTGTGTTAGAAGCTGGCTATTCCCCAAATTCTTTAGCGCGTAATTTACGCCGCAACGAATCGAAAACGATCATCGCG
ATCATTCCTGATATCTGCGATCCTTATTACACGGAGATTATTCGTGGTATTGAAGATGCAGCCATGGAGCATGGTTATAT
TGTTCTGTTAGGTGATAGCGGTCAGCAGAAACGACGAGAAAATTCCTTTGTGAATTTGGTCTTTACTAAGCAAGCTGACG
GCATGCTGCTGCTTGGCACTGATCTACCGTTTGATGTCAGCAAACCTGAGCAGAAAAACCTACCGCCAATGGTTATGGCG
TGTGAGTTTGCCCCTGAGCTTGAACTACCAACAGTTCACATTGATAACCTGACCTCTGCGTTTGAAGTGGTCAACTATCT
TACTCAGCTTGGTCATAAGCGCATCGCACAAATTTCCGGGCCAGAAACGGCGACTCTGTGTCAATTCCGTCAGCAAGGCT
ATCAACAAGCATTGCGCCGCGCGGGGATTACAATGAACCCGACTTACAGCACATTTGGTGAGTTCACTTTTGAGGCGGGT
GCCAAAGCGGTCAGACAATTACTCGCGCTGCCTGAGCCACCGACGGCGATTTTCTGTCACAACGATGCGATGGCGATTGG
TGCGATCCAAGAAGCGAAACGTCTTGGTTTACGGGTACCACAAGATTTATCAGTAGTGGGTTTTGATGACATTCAGTTCG
CTCAATATTGCGATCCACCGCTGACCACCATCTCACAGCCTCGTTATGAGATTGGCCGTCAAGCCATGCTGATGATGCTA
GAGTTGCTGCGTGGTCATGATGTCCGTGCGGGGTCGCGTTTATTAGAAACGCAATTAGTGGTACGTAAGAGTGCTGCGCC
ACCAAGAGCTCTCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (19-64)

• Periplasmic binding protein-like domain (Peripla_BP_3) (184-344)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	94.578	94.587	0.895
cytR	Vibrio parahaemolyticus RIMD 2210633	89.053	96.296	0.858