Detailed information NTG0879602

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RJD39_RS10230
• Genome accession: NZ_CP134277
• Coordinates: 2241885..2242868 (-)
• Length: 327 a.a.
• NCBI ID: WP_406732024.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain 21FBVib0096
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2236885..2247868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD39_RS10205 (RJD39_10195)	rimM	2236914..2237468 (-)	555	WP_005593970.1	ribosome maturation factor RimM	-
RJD39_RS10210 (RJD39_10200)	rpsP	2237493..2237741 (-)	249	WP_005593968.1	30S ribosomal protein S16	-
RJD39_RS10215 (RJD39_10205)	ffh	2237953..2239332 (-)	1380	WP_005593966.1	signal recognition particle protein	-
RJD39_RS10220 (RJD39_10210)	-	2239515..2240309 (+)	795	WP_005593965.1	inner membrane protein YpjD	-
RJD39_RS10225 (RJD39_10215)	-	2240438..2241712 (+)	1275	WP_005593964.1	HlyC/CorC family transporter	-
RJD39_RS10230 (RJD39_10220)	rpoS	2241885..2242868 (-)	984	WP_406732024.1	RNA polymerase sigma factor RpoS	Regulator
RJD39_RS10235 (RJD39_10225)	nlpD	2242946..2243866 (-)	921	WP_406732025.1	murein hydrolase activator NlpD	-
RJD39_RS10240 (RJD39_10230)	-	2243869..2244495 (-)	627	WP_009387609.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RJD39_RS10245 (RJD39_10235)	surE	2244499..2245242 (-)	744	WP_005598101.1	5'/3'-nucleotidase SurE	-
RJD39_RS10250 (RJD39_10240)	truD	2245269..2246351 (-)	1083	WP_406732027.1	tRNA pseudouridine(13) synthase TruD	-
RJD39_RS10255 (RJD39_10245)	ispF	2246423..2246902 (-)	480	WP_038219896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RJD39_RS10260 (RJD39_10250)	ispD	2246906..2247628 (-)	723	WP_406732028.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37426.56 Da
• Isoelectric Point: 4.8400

>NTDB_id=879602 RJD39_RS10230 WP_406732024.1 2241885..2242868(-) (rpoS) [Vibrio scophthalmi strain 21FBVib0096]
MSMSNTAKKVEEFDLNNMETLEVEAQTAKKSASANAAAKEEYEVSNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAMQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVKHSDP
EVSTQDDDIKDSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLSMEN
LFSVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=879602 RJD39_RS10230 WP_406732024.1 2241885..2242868(-) (rpoS) [Vibrio scophthalmi strain 21FBVib0096]
ATGAGTATGAGCAATACAGCAAAAAAAGTTGAAGAATTTGATCTCAATAACATGGAAACGTTAGAGGTTGAAGCACAAAC
TGCAAAAAAATCCGCATCAGCTAATGCAGCTGCGAAAGAAGAGTATGAGGTCTCGAATAAGAGCCTTGATGCGACGCAGC
TTTACCTTGGCGAAATCGGCTTTTCACCACTACTTACCGCAGAAGAAGAAGTGCTTTATGCTCGCCGTGCCTTGCGTGGT
GATGAAGCAGCACGTAAACGTATGATCGAAAGTAATCTGCGTTTGGTGGTGAAGATTTCTCGTCGTTACAGCAATCGTGG
TCTTGCACTGCTTGATTTGATTGAAGAAGGTAACTTAGGTCTGATCCGAGCGGTTGAAAAGTTTGATCCAGAGCGTGGCT
TCCGTTTTTCAACGTATGCTACTTGGTGGATTCGTCAAACCATCGAACGTGCGTTGATGAACCAAACCCGCACAATTCGT
CTACCGATTCACGTCGTTAAAGAGCTGAATATTTATCTGCGTACCGCTCGCGAGCTTTCACAAAAGCTTGACCATGAGCC
AACGGCAGAAGAGATTGCAATGCAATTAGATAAGCCAGTTGATGATGTGAGTAAAATGCTACGCCTGAATGAGCGTATTA
GTTCGGTTGATACCCCAATTGGTGGTGATGGCGAAAAAGCACTGTTGGATATTATTCCTGATGTGAAGCATTCAGATCCT
GAAGTATCAACACAAGATGATGATATTAAGGATTCATTGATTAATTGGCTTGATGAGTTAAACCCTAAGCAAAAAGAAGT
TTTAGCGCGCCGTTTTGGTCTGCTTGGGTATGAACCATCAACGCTTGAAGAAGTGGGACGCGAGATTAATCTAACACGTG
AGCGTGTGCGTCAGATTCAAGTAGAAGGTCTACGTCGTTTACGTGAAATCTTGATTAAACAAGGTTTGAGCATGGAAAAC
CTGTTCAGCGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.934	100	0.847