Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RJD39_RS10075 Genome accession   NZ_CP134277
Coordinates   2208879..2209397 (-) Length   172 a.a.
NCBI ID   WP_268674498.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2203879..2214397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS10050 (RJD39_10040) - 2203981..2205621 (-) 1641 WP_406732005.1 methyl-accepting chemotaxis protein -
  RJD39_RS10055 (RJD39_10045) - 2206198..2206854 (+) 657 WP_009388256.1 inorganic diphosphatase -
  RJD39_RS10060 (RJD39_10050) - 2207018..2207896 (-) 879 WP_406732006.1 DMT family transporter -
  RJD39_RS10070 (RJD39_10060) - 2208310..2208786 (+) 477 WP_005593999.1 RDD family protein -
  RJD39_RS10075 (RJD39_10065) luxS 2208879..2209397 (-) 519 WP_268674498.1 S-ribosylhomocysteine lyase Regulator
  RJD39_RS10080 (RJD39_10070) - 2209415..2210026 (-) 612 WP_005593997.1 hypothetical protein -
  RJD39_RS10085 (RJD39_10075) gshA 2210043..2211608 (-) 1566 WP_268674499.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18855.59 Da        Isoelectric Point: 4.7999

>NTDB_id=879595 RJD39_RS10075 WP_268674498.1 2208879..2209397(-) (luxS) [Vibrio scophthalmi strain 21FBVib0096]
MPLLDSFTVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFTTPNKDILSEKGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPSEQQVATAWLAAMADVLTVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIAAGISVNKNDDLA
LPAEMLNELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=879595 RJD39_RS10075 WP_268674498.1 2208879..2209397(-) (luxS) [Vibrio scophthalmi strain 21FBVib0096]
ATGCCACTACTAGATAGCTTTACTGTCGATCATACCCGCATGCATGCACCTGCTGTGCGTGTTGCGAAAACCATGACAAC
GCCAAAAGGCGACACCATTACGGTTTTTGATTTGCGTTTTACAACGCCAAACAAAGACATCTTGTCAGAGAAAGGTATTC
ATACCCTAGAGCACCTATACGCCGGCTTTATGCGTAATCATCTTAATGGTGATGCGGTAGAAATTATTGATATTTCACCA
ATGGGGTGTCGTACGGGTTTTTACATGAGCTTGATTGGTACGCCGAGTGAACAACAAGTTGCGACGGCATGGCTTGCTGC
AATGGCTGACGTGTTGACGGTTGAAAGCCAGAACAAAATCCCTGAGCTGAATGAATACCAGTGCGGTACTGCGGCGATGC
ACTCACTAGAAGAAGCGAAACAGATTGCGCAAGCAATTATTGCTGCGGGCATTTCAGTGAATAAGAATGACGATCTTGCT
TTGCCGGCTGAAATGCTCAATGAGCTTCGCGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866