Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RJD39_RS05285 Genome accession   NZ_CP134277
Coordinates   1112766..1114190 (+) Length   474 a.a.
NCBI ID   WP_406733579.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1107766..1119190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS05265 (RJD39_05265) - 1108714..1109325 (-) 612 WP_406733574.1 flavin reductase family protein -
  RJD39_RS05270 (RJD39_05270) - 1110028..1110708 (+) 681 WP_069446610.1 nucleoside-diphosphate sugar epimerase -
  RJD39_RS05275 (RJD39_05275) - 1110782..1111858 (-) 1077 WP_406733577.1 serine hydrolase domain-containing protein -
  RJD39_RS05280 (RJD39_05280) - 1112168..1112545 (+) 378 WP_005597559.1 RidA family protein -
  RJD39_RS05285 (RJD39_05285) sbcB 1112766..1114190 (+) 1425 WP_406733579.1 exodeoxyribonuclease I Machinery gene
  RJD39_RS05290 (RJD39_05290) - 1114234..1114599 (+) 366 WP_009387298.1 CidA/LrgA family protein -
  RJD39_RS05295 (RJD39_05295) - 1114599..1115276 (+) 678 WP_009387301.1 CidB/LrgB family autolysis modulator -
  RJD39_RS05300 (RJD39_05300) cdd 1115464..1116351 (+) 888 WP_268674930.1 cytidine deaminase -
  RJD39_RS05305 (RJD39_05305) - 1116453..1117664 (-) 1212 WP_069446606.1 HD-GYP domain-containing protein -
  RJD39_RS05310 (RJD39_05310) - 1117937..1118410 (-) 474 WP_069446605.1 response regulator -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54754.16 Da        Isoelectric Point: 4.9475

>NTDB_id=879589 RJD39_RS05285 WP_406733579.1 1112766..1114190(+) (sbcB) [Vibrio scophthalmi strain 21FBVib0096]
MQQEHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPGVEAALITGISPQLAASKGLIEP
EFIRQIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGYI
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKIKAAQPKLFDYFLTMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWIVPVAWHPTNKNAVIVVDLAKDPQVLFDLDEDALKERLYTKHSDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAD
KIGIDREQCLQNLQVIRQHPEIREKLIGLFAVEREYEKSADVDTQLYDGFFSPADRAAMDIVRQTEPEHLAALDITFSDA
RIEPLLFRYRARNFPWTLTEQEQLRWNSHCQDYFQSRMDEYMLNFENLVHEHESDTKKITLLKSVYQYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=879589 RJD39_RS05285 WP_406733579.1 1112766..1114190(+) (sbcB) [Vibrio scophthalmi strain 21FBVib0096]
ATGCAACAAGAGCACCAACCGACGTTTTTCTTCTTCGATTATGAAACGTGGGGAACCAGCCCAGCCAAAGATCGCCCAAG
CCAATTTGCGGGTGTGCGCACGGACATGGACTTCAATATTATTGGCGAACCTCTTGTCATCTATTGCCAACCACCCTCAG
ACTATTTGCCAGGAGTGGAAGCGGCGCTGATCACTGGCATTTCTCCTCAACTGGCTGCAAGTAAAGGCCTGATCGAGCCT
GAATTTATCCGCCAAATTCATGAACAATTGGCAACGCCAAACACGATTAGCCTTGGTTACAATAGTATTCGTTTTGATGA
CGAAGTAACGCGCTATACTTGTTACCGCAATTTCTTTGACCCTTATGCGTGGAGCTGGCAAAACGGTAACTCGCGTTGGG
ACTTACTCGATGTGATGCGTGCTTGCCATGCTTTACGCCCTGAAGGTATTGAATGGCCAGAAAACGACGAAGGCTATATT
AGCTTCAAACTTGAGCACCTTTCTGTGGCGAATGGTATTGAACATGCCAATGCGCACGATGCGATGGCCGATGTTATTGC
CACGATCGAACTGGCAAAAAAAATCAAAGCCGCACAACCAAAACTGTTTGATTACTTCCTTACCATGCGTCACAAGCGCA
AGCTCAACGAATTGGTCGATATCGTCAATATGACCCCGCTGATGCATGTCTCGGGAATGCTTGGCCGTGAATGCAACTAT
ACCAGCTGGATTGTGCCTGTTGCTTGGCACCCAACCAATAAAAATGCAGTTATCGTGGTTGATCTCGCCAAAGACCCACA
AGTATTGTTCGATTTGGATGAGGATGCGTTGAAAGAGCGCCTATATACCAAACACAGTGATTTGGCTCCTGATGAGTTGC
CCGTTCCTGTAAAGCTGGTGCATTTGAACAAATGTCCGATTCTTGCCCCTGCGAAAACACTGACGGCAGAAAATGCCGAC
AAGATTGGCATCGATCGTGAACAGTGCTTACAAAACTTACAAGTGATCCGTCAACACCCAGAGATCCGAGAAAAATTGAT
TGGCTTGTTCGCTGTTGAACGTGAATATGAAAAGAGCGCTGACGTTGATACTCAACTCTATGATGGATTCTTTTCACCCG
CGGATCGCGCTGCGATGGACATTGTTCGTCAAACCGAACCTGAGCACTTAGCGGCGCTTGATATCACCTTCAGCGATGCG
CGTATCGAACCGCTATTGTTCCGTTATCGTGCGCGTAACTTCCCATGGACACTCACCGAGCAAGAACAGCTTCGTTGGAA
TAGCCATTGCCAGGACTACTTCCAAAGTCGCATGGACGAGTACATGCTAAATTTTGAAAACTTAGTTCACGAACATGAAA
GTGATACAAAGAAAATCACTCTATTAAAATCTGTGTATCAATACGTAGAGAAGCTTGTTTCGTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

99.789

0.793