Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RJD39_RS01415 Genome accession   NZ_CP134277
Coordinates   249285..250631 (+) Length   448 a.a.
NCBI ID   WP_009387868.1    Uniprot ID   F9RGY7
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 244285..255631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS01400 (RJD39_01400) - 244837..246150 (+) 1314 WP_069446967.1 anaerobic C4-dicarboxylate transporter family protein -
  RJD39_RS01410 (RJD39_01410) uvrB 246947..248977 (+) 2031 WP_005593858.1 excinuclease ABC subunit UvrB -
  RJD39_RS01415 (RJD39_01415) luxO 249285..250631 (+) 1347 WP_009387868.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RJD39_RS01420 (RJD39_01420) luxU 250652..250990 (+) 339 WP_406732849.1 quorum-sensing phosphorelay protein LuxU -
  RJD39_RS01425 (RJD39_01425) - 250976..251863 (-) 888 WP_009387866.1 YvcK family protein -
  RJD39_RS01430 (RJD39_01430) moaA 252182..253171 (+) 990 WP_406732851.1 GTP 3',8-cyclase MoaA -
  RJD39_RS01435 (RJD39_01435) moaB 253262..253774 (+) 513 WP_005593866.1 molybdenum cofactor biosynthesis protein B -
  RJD39_RS01440 (RJD39_01440) moaC 253799..254278 (+) 480 WP_005593869.1 cyclic pyranopterin monophosphate synthase MoaC -
  RJD39_RS01445 (RJD39_01445) moaD 254275..254520 (+) 246 WP_005593871.1 molybdopterin synthase sulfur carrier subunit -
  RJD39_RS01450 (RJD39_01450) moaE 254522..254977 (+) 456 WP_005593872.1 molybdopterin synthase catalytic subunit MoaE -
  RJD39_RS01455 (RJD39_01455) - 255186..255602 (+) 417 WP_009387864.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49745.85 Da        Isoelectric Point: 5.1536

>NTDB_id=879582 RJD39_RS01415 WP_009387868.1 249285..250631(+) (luxO) [Vibrio scophthalmi strain 21FBVib0096]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLEFRTPDLILLDLRLPDMTGMDVLQAVKQQNPDVPVIFMTAHGSI
DTAVEAMRLGAQDFLIKPCEADRLRVTVNNAIRKATKLRTEAGTNQGYQGFIGSSHTMQAVYRTIDSAATSKASIFITGE
SGTGKEVCAEALHATSNRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDREGAAELADGGTLFLDELCEMDLDLQ
TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLGFM
SKEEGKDFIRLSPEVVDRFARYEWPGNVRQLQNVLRNVVVLNNGREIRLDMLPPPLNQPCEGVSRSVNEETETLSVHDIF
PLWLTEKNAIKLAIKACEGNIPKAAGYLDVSPSTLYRKLQGWNEKETK

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=879582 RJD39_RS01415 WP_009387868.1 249285..250631(+) (luxO) [Vibrio scophthalmi strain 21FBVib0096]
ATGGTAGAAGATACCGCCTCTGTTGCGGCACTCTATCGTTCCTATCTTACGCCGCTGGGTATCGATATTAATATCGTCGG
TACCGGGCGCGATGCGATTGAAAGTCTTGAATTTCGCACTCCCGATTTAATCTTGCTCGATTTGCGCTTGCCCGATATGA
CAGGGATGGATGTTCTACAAGCGGTCAAACAGCAAAACCCGGATGTGCCGGTTATTTTCATGACTGCTCATGGCTCGATC
GATACCGCGGTTGAGGCGATGCGGTTAGGCGCACAAGATTTCTTGATCAAACCCTGTGAAGCGGACCGACTGCGCGTTAC
GGTAAACAATGCGATTCGCAAAGCAACGAAGCTAAGAACCGAAGCGGGAACCAATCAAGGCTATCAAGGGTTTATCGGTA
GTAGTCATACCATGCAAGCGGTCTATCGCACGATTGACTCGGCGGCGACCAGTAAAGCGAGTATTTTCATTACTGGTGAA
AGTGGTACCGGCAAAGAGGTGTGTGCAGAGGCATTGCATGCCACCAGTAATCGTGGCGATAAACCATTTATTGCCATCAA
CTGTGCTGCGATTCCTAAAGATTTGATTGAAAGTGAATTGTTTGGTCACGTTAAAGGTGCCTTTACTGGCGCGGCAACTG
ATCGTGAAGGCGCTGCGGAACTGGCCGATGGCGGAACCCTGTTTTTGGATGAATTGTGCGAAATGGATTTGGACTTGCAG
ACCAAATTACTGCGTTTTATCCAAACCGGAACCTTCCAAAAGGTGGGTTCATCAAAAATGAAAAGTGTGGATGTACGTTT
TGTTTGTGCAACCAACCGAGACCCATGGAAAGAAGTACAGGAAGGCCGCTTTCGTGAAGACTTATATTATCGCCTTTACG
TTATCCCGCTGCACTTACCACCTTTGCGTGAGCGTGGCGAAGATGTCATTGAAATTGCATACTCCTTGCTAGGCTTTATG
TCGAAAGAAGAAGGCAAAGATTTTATCCGTCTCTCGCCGGAAGTGGTTGATCGCTTTGCTCGTTATGAGTGGCCCGGTAA
TGTGCGTCAATTGCAAAATGTACTGAGAAATGTAGTGGTGCTTAACAATGGCCGTGAAATCCGCTTAGACATGTTACCAC
CACCGTTGAACCAACCTTGTGAGGGCGTGTCACGCAGCGTCAATGAAGAAACAGAGACCTTGTCGGTACACGATATTTTC
CCGTTATGGCTGACGGAAAAAAATGCCATCAAGCTTGCGATAAAAGCGTGTGAGGGAAATATTCCGAAAGCGGCCGGTTA
TCTCGATGTTAGCCCATCGACACTATACCGTAAGCTACAAGGTTGGAATGAAAAAGAGACCAAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(132-297)

Bacterial regulatory protein, Fis family (HTH_8)

(402-440)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9RGY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.618

99.33

0.85