Detailed information NTG0879580

Bioinformatically predicted

Overview

• Name: cqsA
• Type: Regulator
• Locus tag: RJD38_RS18725
• Genome accession: NZ_CP134272
• Coordinates: 836816..838000 (+)
• Length: 394 a.a.
• NCBI ID: WP_065546093.1
• Uniprot ID: A0A1C7FFR0
• Organism: Vibrio scophthalmi strain 20FBVib0200
• Function: induction of competence (predicted from homology) Competence regulation

Genomic Context

Location: 831816..843000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD38_RS18700 (RJD38_18695)	-	832121..832599 (+)	479	Protein_756	IS5/IS1182 family transposase	-
RJD38_RS18705 (RJD38_18700)	-	832882..833559 (-)	678	Protein_757	IS110 family transposase	-
RJD38_RS18710 (RJD38_18705)	-	833663..834871 (+)	1209	WP_032073033.1	IS4 family transposase	-
RJD38_RS18715 (RJD38_18710)	-	834868..835191 (+)	324	WP_367971458.1	glutamyl-tRNA amidotransferase	-
RJD38_RS18720 (RJD38_18715)	-	835294..836541 (+)	1248	WP_065546092.1	cytosine permease	-
RJD38_RS18725 (RJD38_18720)	cqsA	836816..838000 (+)	1185	WP_065546093.1	alpha-hydroxyketone-type quorum-sensing autoinducer synthase	Regulator
RJD38_RS18730 (RJD38_18725)	-	838522..838779 (-)	258	WP_065546094.1	hypothetical protein	-
RJD38_RS18735 (RJD38_18730)	-	838850..839686 (+)	837	WP_065546095.1	alpha/beta fold hydrolase	-
RJD38_RS18740 (RJD38_18735)	-	839775..840671 (-)	897	WP_065546096.1	hypothetical protein	-
RJD38_RS18745 (RJD38_18740)	-	841292..841624 (+)	333	WP_231893196.1	hypothetical protein	-

Sequence

Protein

• Length: 394 a.a.
• Molecular weight: 43626.94 Da
• Isoelectric Point: 7.0402

>NTDB_id=879580 RJD38_RS18725 WP_065546093.1 836816..838000(+) (cqsA) [Vibrio scophthalmi strain 20FBVib0200]
MCNGRKNKILPSFIEERLDFYIADLIASNDNKKHLVLGKRPSNDAVVMQSNDYLSLSNHKEILQAHGKAILGLNDNVVMS
AIFLQDSESKPAFEVQLADYVGMESCLISQSGWAANIGLLQTICTENSPVYIDFFAHMSLWEGIRYAGAKAHPFMHNNIK
HLRRQIKRHGAGVIVVDSVYSTIGTIAPLRDIYEIAREFNCTLIVDESHSIGTHGPKGAGLVKALELNDQVDFITLSLAK
TFAYRAGAILGPTKLAKTLPFVAYPAIFSSTVLPQELVRLEKTLEVIKGADARRAKLFNNAEAIASGLRNIGFRIQSESQ
IIALECGSERNTERVRDFLEQRDVFGAVFCRPATGKNNNIIRFSINVDLTASDIDRVLSTCQEAFNHPELEFAS

Nucleotide

• Length: 1185 bp

>NTDB_id=879580 RJD38_RS18725 WP_065546093.1 836816..838000(+) (cqsA) [Vibrio scophthalmi strain 20FBVib0200]
ATGTGTAATGGACGTAAAAACAAAATACTTCCTTCATTTATTGAAGAACGCTTGGATTTTTATATTGCTGATCTGATTGC
AAGTAATGACAACAAAAAACACTTAGTATTAGGCAAGCGACCATCCAATGATGCGGTGGTGATGCAAAGTAATGATTACT
TATCACTGTCCAATCATAAGGAGATTCTACAAGCGCATGGCAAGGCCATTTTGGGGCTCAATGACAACGTCGTTATGTCG
GCGATTTTTTTGCAAGATAGTGAGTCGAAGCCCGCTTTTGAGGTTCAACTGGCGGATTATGTTGGTATGGAAAGTTGCCT
CATTTCTCAATCTGGATGGGCAGCAAATATTGGCTTACTCCAGACGATTTGTACCGAGAATTCACCCGTGTATATTGATT
TTTTTGCCCATATGTCGCTTTGGGAAGGCATTCGATATGCTGGTGCGAAGGCTCATCCATTTATGCACAACAACATAAAA
CACCTGCGCCGACAAATTAAACGCCATGGGGCAGGTGTGATTGTTGTGGACTCTGTCTACAGTACTATCGGAACGATAGC
GCCACTGCGTGATATCTACGAAATAGCACGTGAATTTAACTGTACGTTAATCGTAGATGAATCCCATTCAATAGGGACTC
ACGGCCCGAAAGGCGCAGGGTTAGTAAAAGCACTAGAACTCAATGACCAAGTGGATTTTATTACTTTAAGCTTAGCCAAA
ACCTTTGCTTATCGCGCTGGTGCTATATTAGGCCCGACTAAACTGGCTAAGACGCTACCATTTGTTGCTTATCCCGCGAT
ATTTAGCTCGACCGTATTACCTCAAGAACTTGTGCGTCTAGAGAAAACGTTAGAGGTGATTAAAGGAGCAGATGCTAGGC
GAGCAAAACTGTTTAACAACGCAGAGGCCATAGCATCAGGGTTGAGGAATATTGGTTTTCGCATCCAGAGCGAGTCACAG
ATTATCGCTTTAGAATGTGGGAGTGAGAGGAATACTGAACGTGTGCGTGATTTCTTGGAGCAACGAGATGTGTTTGGCGC
AGTGTTTTGTCGGCCAGCCACTGGGAAAAACAACAACATCATTCGCTTTTCAATAAATGTAGATTTGACAGCTTCTGATA
TCGACCGTGTGTTATCTACGTGCCAAGAAGCGTTTAATCATCCCGAGTTAGAGTTCGCGTCATAG

Domains

Predicted by InterproScan.

• Aminotransferase class I and II (Aminotran_1_2) (46-377)

3D structure

• AlphaFold DB: A0A1C7FFR0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cqsA	Vibrio cholerae strain A1552	56.658	97.208	0.551